Experiment: nitrate (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS03420 and SGL_RS03425 are separated by 83 nucleotides SGL_RS03425 and SGL_RS03430 are separated by 102 nucleotides
SGL_RS03420: SGL_RS03420 - UbiD family decarboxylase, at 329,555 to 331,060
_RS03420
SGL_RS03425: SGL_RS03425 - precorrin-3B C(17)-methyltransferase, at 331,144 to 333,027
_RS03425
SGL_RS03430: SGL_RS03430 - DUF4335 domain-containing protein, at 333,130 to 334,485
_RS03430
Position (kb) 331
332
333
334 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 330.330 kb on - strand, within SGL_RS03420 at 330.330 kb on - strand, within SGL_RS03420 at 330.547 kb on + strand, within SGL_RS03420 at 330.555 kb on - strand, within SGL_RS03420 at 330.783 kb on - strand, within SGL_RS03420 at 330.870 kb on - strand, within SGL_RS03420 at 330.900 kb on - strand, within SGL_RS03420 at 330.946 kb on - strand at 330.988 kb on + strand at 331.058 kb on - strand at 331.063 kb on - strand at 331.075 kb on - strand at 331.077 kb on + strand at 331.620 kb on - strand, within SGL_RS03425 at 331.870 kb on + strand, within SGL_RS03425 at 331.980 kb on - strand, within SGL_RS03425 at 332.228 kb on - strand, within SGL_RS03425 at 332.255 kb on - strand, within SGL_RS03425 at 332.618 kb on + strand, within SGL_RS03425 at 332.764 kb on + strand, within SGL_RS03425 at 332.775 kb on - strand, within SGL_RS03425 at 333.061 kb on - strand at 333.167 kb on - strand at 333.182 kb on - strand at 333.190 kb on - strand at 333.606 kb on + strand, within SGL_RS03430 at 333.874 kb on - strand, within SGL_RS03430 at 334.020 kb on + strand, within SGL_RS03430
Per-strain Table
Position Strand Gene LocusTag Fraction nitrate (N) remove 330,330 - SGL_RS03420 0.51 -2.3 330,330 - SGL_RS03420 0.51 -2.1 330,547 + SGL_RS03420 0.66 -5.5 330,555 - SGL_RS03420 0.66 -2.1 330,783 - SGL_RS03420 0.82 -3.1 330,870 - SGL_RS03420 0.87 -4.1 330,900 - SGL_RS03420 0.89 -0.8 330,946 - -2.6 330,988 + -2.4 331,058 - -0.0 331,063 - -0.5 331,075 - -2.1 331,077 + -1.3 331,620 - SGL_RS03425 0.25 -3.6 331,870 + SGL_RS03425 0.39 -3.6 331,980 - SGL_RS03425 0.44 -4.2 332,228 - SGL_RS03425 0.58 -3.0 332,255 - SGL_RS03425 0.59 -2.7 332,618 + SGL_RS03425 0.78 -3.0 332,764 + SGL_RS03425 0.86 -3.0 332,775 - SGL_RS03425 0.87 -1.4 333,061 - +0.0 333,167 - -5.2 333,182 - -5.8 333,190 - -3.6 333,606 + SGL_RS03430 0.35 -0.4 333,874 - SGL_RS03430 0.55 -5.3 334,020 + SGL_RS03430 0.66 -0.9
Or see this region's nucleotide sequence