Experiment: nitrite (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS17830 and SGL_RS17835 are separated by 383 nucleotides SGL_RS17835 and SGL_RS17840 are separated by 42 nucleotides SGL_RS17840 and SGL_RS17845 are separated by 62 nucleotides
SGL_RS17830: SGL_RS17830 - undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase, at 3,458,330 to 3,459,397
_RS17830
SGL_RS17835: SGL_RS17835 - diguanylate cyclase, at 3,459,781 to 3,460,608
_RS17835
SGL_RS17840: SGL_RS17840 - hypothetical protein, at 3,460,651 to 3,461,250
_RS17840
SGL_RS17845: SGL_RS17845 - hypothetical protein, at 3,461,313 to 3,461,654
_RS17845
Position (kb)
3459
3460
3461 Strain fitness (log2 ratio)
-1
0
1
2 at 3459.410 kb on - strand at 3459.525 kb on + strand at 3459.636 kb on - strand at 3459.638 kb on + strand at 3460.125 kb on + strand, within SGL_RS17835 at 3460.190 kb on - strand, within SGL_RS17835 at 3460.380 kb on + strand, within SGL_RS17835 at 3460.404 kb on - strand, within SGL_RS17835 at 3460.503 kb on + strand, within SGL_RS17835 at 3460.537 kb on - strand at 3460.582 kb on + strand at 3460.582 kb on + strand at 3460.636 kb on + strand at 3460.636 kb on - strand at 3460.655 kb on + strand at 3460.775 kb on + strand, within SGL_RS17840 at 3460.802 kb on - strand, within SGL_RS17840 at 3460.847 kb on + strand, within SGL_RS17840 at 3460.883 kb on + strand, within SGL_RS17840 at 3460.941 kb on - strand, within SGL_RS17840 at 3460.960 kb on - strand, within SGL_RS17840 at 3461.229 kb on - strand at 3461.244 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite (N) remove 3,459,410 - -0.0 3,459,525 + -1.0 3,459,636 - +2.2 3,459,638 + -0.2 3,460,125 + SGL_RS17835 0.42 +0.9 3,460,190 - SGL_RS17835 0.49 -0.0 3,460,380 + SGL_RS17835 0.72 -1.3 3,460,404 - SGL_RS17835 0.75 -0.0 3,460,503 + SGL_RS17835 0.87 +0.3 3,460,537 - +0.1 3,460,582 + -0.3 3,460,582 + +0.2 3,460,636 + -0.2 3,460,636 - +0.2 3,460,655 + -0.1 3,460,775 + SGL_RS17840 0.21 -0.1 3,460,802 - SGL_RS17840 0.25 +0.4 3,460,847 + SGL_RS17840 0.33 -0.3 3,460,883 + SGL_RS17840 0.39 -0.1 3,460,941 - SGL_RS17840 0.48 +0.3 3,460,960 - SGL_RS17840 0.52 +0.2 3,461,229 - -0.0 3,461,244 + -0.4
Or see this region's nucleotide sequence