Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS17680

Experiment: nitrite (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS17675 and SGL_RS17680 are separated by 192 nucleotidesSGL_RS17680 and SGL_RS17685 are separated by 549 nucleotides SGL_RS17675: SGL_RS17675 - phosphopyruvate hydratase, at 3,420,416 to 3,421,714 _RS17675 SGL_RS17680: SGL_RS17680 - hypothetical protein, at 3,421,907 to 3,422,482 _RS17680 SGL_RS17685: SGL_RS17685 - ArsB/NhaD family transporter, at 3,423,032 to 3,424,381 _RS17685 Position (kb) 3421 3422 3423Strain fitness (log2 ratio) -1 0 1 2 3 4 5 6at 3421.766 kb on + strandat 3421.831 kb on + strandat 3422.237 kb on - strand, within SGL_RS17680at 3423.194 kb on + strand, within SGL_RS17685at 3423.202 kb on - strand, within SGL_RS17685at 3423.333 kb on + strand, within SGL_RS17685at 3423.333 kb on + strand, within SGL_RS17685at 3423.399 kb on - strand, within SGL_RS17685at 3423.410 kb on - strand, within SGL_RS17685

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrite (N)
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3,421,766 + +1.8
3,421,831 + +1.4
3,422,237 - SGL_RS17680 0.57 +3.6
3,423,194 + SGL_RS17685 0.12 +5.4
3,423,202 - SGL_RS17685 0.13 +6.0
3,423,333 + SGL_RS17685 0.22 +5.8
3,423,333 + SGL_RS17685 0.22 +5.6
3,423,399 - SGL_RS17685 0.27 +5.4
3,423,410 - SGL_RS17685 0.28 +5.7

Or see this region's nucleotide sequence