Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS17605

Experiment: nitrite (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS17600 and SGL_RS17605 are separated by 238 nucleotidesSGL_RS17605 and SGL_RS20025 are separated by 81 nucleotidesSGL_RS20025 and SGL_RS19130 are separated by 8 nucleotides SGL_RS17600: SGL_RS17600 - phycobilisome rod-core linker polypeptide, at 3,403,557 to 3,404,306 _RS17600 SGL_RS17605: SGL_RS17605 - response regulator transcription factor, at 3,404,545 to 3,405,249 _RS17605 SGL_RS20025: SGL_RS20025 - IS5/IS1182 family transposase, at 3,405,331 to 3,405,453 _RS20025 SGL_RS19130: SGL_RS19130 - IS630 family transposase, at 3,405,462 to 3,406,311 _RS19130 Position (kb) 3404 3405 3406Strain fitness (log2 ratio) -2 -1 0 1at 3403.733 kb on + strand, within SGL_RS17600at 3403.751 kb on + strand, within SGL_RS17600at 3404.186 kb on - strand, within SGL_RS17600at 3404.192 kb on + strand, within SGL_RS17600at 3404.460 kb on - strandat 3404.513 kb on + strandat 3404.613 kb on + strandat 3404.663 kb on - strand, within SGL_RS17605at 3404.898 kb on + strand, within SGL_RS17605at 3404.900 kb on + strand, within SGL_RS17605at 3404.928 kb on - strand, within SGL_RS17605at 3404.928 kb on - strand, within SGL_RS17605at 3404.928 kb on - strand, within SGL_RS17605at 3404.965 kb on - strand, within SGL_RS17605at 3405.046 kb on - strand, within SGL_RS17605at 3405.184 kb on + strandat 3405.192 kb on - strandat 3405.351 kb on + strand, within SGL_RS20025at 3405.491 kb on + strandat 3405.906 kb on - strand, within SGL_RS19130

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrite (N)
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3,403,733 + SGL_RS17600 0.23 -1.2
3,403,751 + SGL_RS17600 0.26 -1.1
3,404,186 - SGL_RS17600 0.84 -0.5
3,404,192 + SGL_RS17600 0.85 -1.4
3,404,460 - +0.2
3,404,513 + -1.4
3,404,613 + -1.3
3,404,663 - SGL_RS17605 0.17 -1.6
3,404,898 + SGL_RS17605 0.50 -1.6
3,404,900 + SGL_RS17605 0.50 -1.3
3,404,928 - SGL_RS17605 0.54 -1.8
3,404,928 - SGL_RS17605 0.54 -1.4
3,404,928 - SGL_RS17605 0.54 -0.9
3,404,965 - SGL_RS17605 0.60 -1.4
3,405,046 - SGL_RS17605 0.71 -1.8
3,405,184 + -2.1
3,405,192 - -2.2
3,405,351 + SGL_RS20025 0.16 -1.1
3,405,491 + -0.0
3,405,906 - SGL_RS19130 0.52 +1.1

Or see this region's nucleotide sequence