Experiment: nitrite (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS17600 and SGL_RS17605 are separated by 238 nucleotides SGL_RS17605 and SGL_RS20025 are separated by 81 nucleotides SGL_RS20025 and SGL_RS19130 are separated by 8 nucleotides
SGL_RS17600: SGL_RS17600 - phycobilisome rod-core linker polypeptide, at 3,403,557 to 3,404,306
_RS17600
SGL_RS17605: SGL_RS17605 - response regulator transcription factor, at 3,404,545 to 3,405,249
_RS17605
SGL_RS20025: SGL_RS20025 - IS5/IS1182 family transposase, at 3,405,331 to 3,405,453
_RS20025
SGL_RS19130: SGL_RS19130 - IS630 family transposase, at 3,405,462 to 3,406,311
_RS19130
Position (kb)
3404
3405
3406 Strain fitness (log2 ratio)
-2
-1
0
1 at 3403.733 kb on + strand, within SGL_RS17600 at 3403.751 kb on + strand, within SGL_RS17600 at 3404.186 kb on - strand, within SGL_RS17600 at 3404.192 kb on + strand, within SGL_RS17600 at 3404.460 kb on - strand at 3404.513 kb on + strand at 3404.613 kb on + strand at 3404.663 kb on - strand, within SGL_RS17605 at 3404.898 kb on + strand, within SGL_RS17605 at 3404.900 kb on + strand, within SGL_RS17605 at 3404.928 kb on - strand, within SGL_RS17605 at 3404.928 kb on - strand, within SGL_RS17605 at 3404.928 kb on - strand, within SGL_RS17605 at 3404.965 kb on - strand, within SGL_RS17605 at 3405.046 kb on - strand, within SGL_RS17605 at 3405.184 kb on + strand at 3405.192 kb on - strand at 3405.351 kb on + strand, within SGL_RS20025 at 3405.491 kb on + strand at 3405.906 kb on - strand, within SGL_RS19130
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite (N) remove 3,403,733 + SGL_RS17600 0.23 -1.2 3,403,751 + SGL_RS17600 0.26 -1.1 3,404,186 - SGL_RS17600 0.84 -0.5 3,404,192 + SGL_RS17600 0.85 -1.4 3,404,460 - +0.2 3,404,513 + -1.4 3,404,613 + -1.3 3,404,663 - SGL_RS17605 0.17 -1.6 3,404,898 + SGL_RS17605 0.50 -1.6 3,404,900 + SGL_RS17605 0.50 -1.3 3,404,928 - SGL_RS17605 0.54 -1.8 3,404,928 - SGL_RS17605 0.54 -1.4 3,404,928 - SGL_RS17605 0.54 -0.9 3,404,965 - SGL_RS17605 0.60 -1.4 3,405,046 - SGL_RS17605 0.71 -1.8 3,405,184 + -2.1 3,405,192 - -2.2 3,405,351 + SGL_RS20025 0.16 -1.1 3,405,491 + -0.0 3,405,906 - SGL_RS19130 0.52 +1.1
Or see this region's nucleotide sequence