Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS16515

Experiment: nitrite (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS16510 and SGL_RS16515 are separated by 56 nucleotidesSGL_RS16515 and SGL_RS16520 are separated by 57 nucleotides SGL_RS16510: SGL_RS16510 - branched-chain amino acid transaminase, at 3,156,760 to 3,157,677 _RS16510 SGL_RS16515: SGL_RS16515 - Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC, at 3,157,734 to 3,158,048 _RS16515 SGL_RS16520: SGL_RS16520 - sirohydrochlorin chelatase, at 3,158,106 to 3,159,116 _RS16520 Position (kb) 3157 3158 3159Strain fitness (log2 ratio) -2 -1 0 1at 3157.245 kb on - strand, within SGL_RS16510at 3157.686 kb on + strandat 3158.163 kb on - strandat 3158.846 kb on - strand, within SGL_RS16520

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrite (N)
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3,157,245 - SGL_RS16510 0.53 -0.1
3,157,686 + +1.4
3,158,163 - -1.8
3,158,846 - SGL_RS16520 0.73 -0.5

Or see this region's nucleotide sequence