Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS15160

Experiment: nitrite (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS15155 and SGL_RS15160 are separated by 71 nucleotidesSGL_RS15160 and SGL_RS15165 are separated by 2 nucleotides SGL_RS15155: SGL_RS15155 - ferrochelatase, at 2,849,096 to 2,850,259 _RS15155 SGL_RS15160: SGL_RS15160 - amidase, at 2,850,331 to 2,851,851 _RS15160 SGL_RS15165: SGL_RS15165 - hypothetical protein, at 2,851,854 to 2,853,269 _RS15165 Position (kb) 2850 2851 2852Strain fitness (log2 ratio) -1 0 1 2 3at 2850.318 kb on + strandat 2850.351 kb on + strandat 2850.359 kb on - strandat 2850.430 kb on - strandat 2850.439 kb on + strandat 2850.665 kb on + strand, within SGL_RS15160at 2850.675 kb on + strand, within SGL_RS15160at 2850.754 kb on + strand, within SGL_RS15160at 2850.762 kb on - strand, within SGL_RS15160at 2850.762 kb on - strand, within SGL_RS15160at 2850.954 kb on + strand, within SGL_RS15160at 2851.024 kb on + strand, within SGL_RS15160at 2851.068 kb on - strand, within SGL_RS15160at 2851.070 kb on + strand, within SGL_RS15160at 2851.075 kb on + strand, within SGL_RS15160at 2851.340 kb on - strand, within SGL_RS15160at 2851.374 kb on - strand, within SGL_RS15160at 2851.459 kb on - strand, within SGL_RS15160at 2851.488 kb on - strand, within SGL_RS15160at 2851.836 kb on - strandat 2851.969 kb on - strandat 2852.164 kb on + strand, within SGL_RS15165at 2852.413 kb on + strand, within SGL_RS15165at 2852.508 kb on + strand, within SGL_RS15165

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrite (N)
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2,850,318 + -0.5
2,850,351 + +2.2
2,850,359 - -0.2
2,850,430 - +1.7
2,850,439 + +2.3
2,850,665 + SGL_RS15160 0.22 +1.9
2,850,675 + SGL_RS15160 0.23 +2.6
2,850,754 + SGL_RS15160 0.28 +1.9
2,850,762 - SGL_RS15160 0.28 +2.0
2,850,762 - SGL_RS15160 0.28 +0.9
2,850,954 + SGL_RS15160 0.41 +2.8
2,851,024 + SGL_RS15160 0.46 +2.8
2,851,068 - SGL_RS15160 0.48 +1.0
2,851,070 + SGL_RS15160 0.49 +2.0
2,851,075 + SGL_RS15160 0.49 +0.1
2,851,340 - SGL_RS15160 0.66 +2.2
2,851,374 - SGL_RS15160 0.69 +1.9
2,851,459 - SGL_RS15160 0.74 +1.4
2,851,488 - SGL_RS15160 0.76 +1.6
2,851,836 - +0.4
2,851,969 - -0.7
2,852,164 + SGL_RS15165 0.22 -0.2
2,852,413 + SGL_RS15165 0.39 +0.3
2,852,508 + SGL_RS15165 0.46 +0.1

Or see this region's nucleotide sequence