Experiment: nitrite (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS14535 and SGL_RS14540 are separated by 13 nucleotides SGL_RS14540 and SGL_RS14545 are separated by 336 nucleotides SGL_RS14545 and SGL_RS14550 are separated by 208 nucleotides
SGL_RS14535: SGL_RS14535 - hypothetical protein, at 2,716,735 to 2,717,163
_RS14535
SGL_RS14540: SGL_RS14540 - bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR, at 2,717,177 to 2,717,713
_RS14540
SGL_RS14545: SGL_RS14545 - GTP cyclohydrolase I FolE, at 2,718,050 to 2,718,754
_RS14545
SGL_RS14550: SGL_RS14550 - competence/damage-inducible protein A, at 2,718,963 to 2,720,213
_RS14550
Position (kb)
2718
2719 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2717.058 kb on - strand, within SGL_RS14535 at 2717.498 kb on - strand, within SGL_RS14540 at 2717.583 kb on - strand, within SGL_RS14540 at 2717.608 kb on - strand, within SGL_RS14540 at 2717.707 kb on - strand at 2717.878 kb on + strand at 2717.880 kb on - strand at 2717.915 kb on - strand at 2718.874 kb on + strand at 2718.993 kb on + strand at 2719.165 kb on + strand, within SGL_RS14550 at 2719.525 kb on - strand, within SGL_RS14550 at 2719.600 kb on - strand, within SGL_RS14550
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite (N) remove 2,717,058 - SGL_RS14535 0.75 +0.4 2,717,498 - SGL_RS14540 0.60 +2.4 2,717,583 - SGL_RS14540 0.76 +0.0 2,717,608 - SGL_RS14540 0.80 +0.8 2,717,707 - -0.2 2,717,878 + -1.8 2,717,880 - -0.7 2,717,915 - -2.2 2,718,874 + -0.2 2,718,993 + +0.1 2,719,165 + SGL_RS14550 0.16 -0.4 2,719,525 - SGL_RS14550 0.45 -0.1 2,719,600 - SGL_RS14550 0.51 +0.1
Or see this region's nucleotide sequence