Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS14545

Experiment: nitrite (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS14535 and SGL_RS14540 are separated by 13 nucleotidesSGL_RS14540 and SGL_RS14545 are separated by 336 nucleotidesSGL_RS14545 and SGL_RS14550 are separated by 208 nucleotides SGL_RS14535: SGL_RS14535 - hypothetical protein, at 2,716,735 to 2,717,163 _RS14535 SGL_RS14540: SGL_RS14540 - bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR, at 2,717,177 to 2,717,713 _RS14540 SGL_RS14545: SGL_RS14545 - GTP cyclohydrolase I FolE, at 2,718,050 to 2,718,754 _RS14545 SGL_RS14550: SGL_RS14550 - competence/damage-inducible protein A, at 2,718,963 to 2,720,213 _RS14550 Position (kb) 2718 2719Strain fitness (log2 ratio) -2 -1 0 1 2at 2717.058 kb on - strand, within SGL_RS14535at 2717.498 kb on - strand, within SGL_RS14540at 2717.583 kb on - strand, within SGL_RS14540at 2717.608 kb on - strand, within SGL_RS14540at 2717.707 kb on - strandat 2717.878 kb on + strandat 2717.880 kb on - strandat 2717.915 kb on - strandat 2718.874 kb on + strandat 2718.993 kb on + strandat 2719.165 kb on + strand, within SGL_RS14550at 2719.525 kb on - strand, within SGL_RS14550at 2719.600 kb on - strand, within SGL_RS14550

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrite (N)
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2,717,058 - SGL_RS14535 0.75 +0.4
2,717,498 - SGL_RS14540 0.60 +2.4
2,717,583 - SGL_RS14540 0.76 +0.0
2,717,608 - SGL_RS14540 0.80 +0.8
2,717,707 - -0.2
2,717,878 + -1.8
2,717,880 - -0.7
2,717,915 - -2.2
2,718,874 + -0.2
2,718,993 + +0.1
2,719,165 + SGL_RS14550 0.16 -0.4
2,719,525 - SGL_RS14550 0.45 -0.1
2,719,600 - SGL_RS14550 0.51 +0.1

Or see this region's nucleotide sequence