Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS14530

Experiment: nitrite (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS14525 and SGL_RS14530 are separated by 65 nucleotidesSGL_RS14530 and SGL_RS14535 are separated by 118 nucleotidesSGL_RS14535 and SGL_RS14540 are separated by 13 nucleotides SGL_RS14525: SGL_RS14525 - reverse transcriptase domain-containing protein, at 2,711,740 to 2,713,305 _RS14525 SGL_RS14530: SGL_RS14530 - carbamoyl-phosphate synthase large subunit, at 2,713,371 to 2,716,616 _RS14530 SGL_RS14535: SGL_RS14535 - hypothetical protein, at 2,716,735 to 2,717,163 _RS14535 SGL_RS14540: SGL_RS14540 - bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR, at 2,717,177 to 2,717,713 _RS14540 Position (kb) 2713 2714 2715 2716 2717Strain fitness (log2 ratio) -2 -1 0 1 2at 2713.325 kb on + strandat 2713.325 kb on - strandat 2713.344 kb on + strandat 2713.352 kb on - strandat 2713.373 kb on + strandat 2713.408 kb on - strandat 2714.496 kb on - strand, within SGL_RS14530at 2716.663 kb on + strandat 2716.712 kb on - strandat 2716.759 kb on + strandat 2716.767 kb on - strandat 2716.767 kb on - strandat 2716.821 kb on + strand, within SGL_RS14535at 2717.058 kb on - strand, within SGL_RS14535at 2717.498 kb on - strand, within SGL_RS14540at 2717.583 kb on - strand, within SGL_RS14540at 2717.608 kb on - strand, within SGL_RS14540

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrite (N)
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2,713,325 + -0.3
2,713,325 - +0.2
2,713,344 + -0.0
2,713,352 - +0.1
2,713,373 + +2.4
2,713,408 - -2.2
2,714,496 - SGL_RS14530 0.35 -0.2
2,716,663 + +0.3
2,716,712 - -1.6
2,716,759 + -0.3
2,716,767 - +0.2
2,716,767 - -0.3
2,716,821 + SGL_RS14535 0.20 +0.4
2,717,058 - SGL_RS14535 0.75 +0.4
2,717,498 - SGL_RS14540 0.60 +2.4
2,717,583 - SGL_RS14540 0.76 +0.0
2,717,608 - SGL_RS14540 0.80 +0.8

Or see this region's nucleotide sequence