Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS13880

Experiment: nitrite (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS13870 and SGL_RS13875 are separated by 64 nucleotidesSGL_RS13875 and SGL_RS13880 are separated by 36 nucleotidesSGL_RS13880 and SGL_RS13885 are separated by 143 nucleotides SGL_RS13870: SGL_RS13870 - rRNA maturation RNase YbeY, at 2,576,285 to 2,576,824 _RS13870 SGL_RS13875: SGL_RS13875 - diacylglycerol kinase, at 2,576,889 to 2,577,416 _RS13875 SGL_RS13880: SGL_RS13880 - aminodeoxychorismate/anthranilate synthase component II, at 2,577,453 to 2,578,043 _RS13880 SGL_RS13885: SGL_RS13885 - chlorophyll synthase ChlG, at 2,578,187 to 2,579,161 _RS13885 Position (kb) 2577 2578 2579Strain fitness (log2 ratio) -3 -2 -1 0 1at 2576.532 kb on - strand, within SGL_RS13870at 2576.532 kb on - strand, within SGL_RS13870at 2576.631 kb on + strand, within SGL_RS13870at 2576.687 kb on + strand, within SGL_RS13870at 2576.716 kb on - strand, within SGL_RS13870at 2576.885 kb on - strandat 2577.411 kb on + strandat 2578.062 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrite (N)
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2,576,532 - SGL_RS13870 0.46 +0.4
2,576,532 - SGL_RS13870 0.46 -3.0
2,576,631 + SGL_RS13870 0.64 -2.6
2,576,687 + SGL_RS13870 0.74 -2.6
2,576,716 - SGL_RS13870 0.80 -2.6
2,576,885 - -1.2
2,577,411 + -2.2
2,578,062 + -0.2

Or see this region's nucleotide sequence