Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS13630

Experiment: nitrite (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS13625 and SGL_RS13630 are separated by 75 nucleotidesSGL_RS13630 and SGL_RS13635 are separated by 53 nucleotides SGL_RS13625: SGL_RS13625 - ATP-dependent zinc metalloprotease FtsH2, at 2,529,009 to 2,530,892 _RS13625 SGL_RS13630: SGL_RS13630 - LON peptidase substrate-binding domain-containing protein, at 2,530,968 to 2,531,612 _RS13630 SGL_RS13635: SGL_RS13635 - twin-arginine translocase subunit TatC, at 2,531,666 to 2,532,430 _RS13635 Position (kb) 2530 2531 2532Strain fitness (log2 ratio) -1 0 1 2at 2530.314 kb on + strand, within SGL_RS13625at 2530.534 kb on + strand, within SGL_RS13625at 2530.548 kb on - strand, within SGL_RS13625at 2530.965 kb on + strandat 2530.976 kb on - strandat 2531.287 kb on - strand, within SGL_RS13630at 2531.440 kb on + strand, within SGL_RS13630at 2531.440 kb on + strand, within SGL_RS13630at 2531.568 kb on - strandat 2531.909 kb on - strand, within SGL_RS13635at 2532.543 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrite (N)
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2,530,314 + SGL_RS13625 0.69 -0.2
2,530,534 + SGL_RS13625 0.81 -0.9
2,530,548 - SGL_RS13625 0.82 -1.6
2,530,965 + -0.2
2,530,976 - +0.2
2,531,287 - SGL_RS13630 0.49 +1.8
2,531,440 + SGL_RS13630 0.73 +1.1
2,531,440 + SGL_RS13630 0.73 +1.6
2,531,568 - +1.0
2,531,909 - SGL_RS13635 0.32 -0.9
2,532,543 + +0.7

Or see this region's nucleotide sequence