Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS13520

Experiment: nitrite (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS13510 and SGL_RS13515 are separated by 226 nucleotidesSGL_RS13515 and SGL_RS13520 are separated by 225 nucleotidesSGL_RS13520 and SGL_RS13525 are separated by 87 nucleotides SGL_RS13510: SGL_RS13510 - transglycosylase domain-containing protein, at 2,501,221 to 2,503,878 _RS13510 SGL_RS13515: SGL_RS13515 - tRNA-Ser, at 2,504,105 to 2,504,189 _RS13515 SGL_RS13520: SGL_RS13520 - glutamine-hydrolyzing GMP synthase, at 2,504,415 to 2,506,043 _RS13520 SGL_RS13525: SGL_RS13525 - DNA cytosine methyltransferase, at 2,506,131 to 2,507,405 _RS13525 Position (kb) 2504 2505 2506 2507Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2503.466 kb on + strand, within SGL_RS13510at 2503.488 kb on - strand, within SGL_RS13510at 2503.586 kb on + strand, within SGL_RS13510at 2503.752 kb on - strandat 2504.042 kb on + strandat 2504.249 kb on - strandat 2504.259 kb on - strandat 2506.047 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrite (N)
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2,503,466 + SGL_RS13510 0.84 -2.8
2,503,488 - SGL_RS13510 0.85 -2.1
2,503,586 + SGL_RS13510 0.89 -3.9
2,503,752 - -0.3
2,504,042 + -0.3
2,504,249 - -0.3
2,504,259 - -0.6
2,506,047 + +0.6

Or see this region's nucleotide sequence