Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS11925

Experiment: nitrite (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS11915 and SGL_RS11920 are separated by 40 nucleotidesSGL_RS11920 and SGL_RS11925 are separated by 242 nucleotidesSGL_RS11925 and SGL_RS11930 are separated by 163 nucleotidesSGL_RS11930 and SGL_RS11935 are separated by 76 nucleotides SGL_RS11915: SGL_RS11915 - 30S ribosomal protein S16, at 2,127,879 to 2,128,127 _RS11915 SGL_RS11920: SGL_RS11920 - KH domain-containing protein, at 2,128,168 to 2,128,524 _RS11920 SGL_RS11925: SGL_RS11925 - glutamine synthetase III, at 2,128,767 to 2,130,941 _RS11925 SGL_RS11930: SGL_RS11930 - DUF29 domain-containing protein, at 2,131,105 to 2,131,539 _RS11930 SGL_RS11935: SGL_RS11935 - photosystem II cytochrome c-550, at 2,131,616 to 2,132,098 _RS11935 Position (kb) 2128 2129 2130 2131Strain fitness (log2 ratio) -1 0 1at 2128.156 kb on + strandat 2128.182 kb on - strandat 2128.441 kb on + strand, within SGL_RS11920at 2128.449 kb on - strand, within SGL_RS11920at 2128.496 kb on + strandat 2128.496 kb on + strandat 2128.533 kb on - strandat 2128.677 kb on - strandat 2128.990 kb on - strand, within SGL_RS11925at 2128.997 kb on + strand, within SGL_RS11925at 2129.002 kb on + strand, within SGL_RS11925at 2129.005 kb on - strand, within SGL_RS11925at 2129.005 kb on - strand, within SGL_RS11925at 2129.099 kb on - strand, within SGL_RS11925at 2129.199 kb on - strand, within SGL_RS11925at 2129.354 kb on - strand, within SGL_RS11925at 2129.478 kb on - strand, within SGL_RS11925at 2129.564 kb on - strand, within SGL_RS11925at 2129.701 kb on - strand, within SGL_RS11925at 2129.973 kb on - strand, within SGL_RS11925at 2130.130 kb on + strand, within SGL_RS11925at 2130.205 kb on + strand, within SGL_RS11925at 2130.239 kb on + strand, within SGL_RS11925at 2130.262 kb on + strand, within SGL_RS11925at 2130.389 kb on - strand, within SGL_RS11925at 2130.799 kb on - strandat 2130.896 kb on + strandat 2131.150 kb on - strand, within SGL_RS11930

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrite (N)
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2,128,156 + +0.8
2,128,182 - +1.2
2,128,441 + SGL_RS11920 0.76 +1.0
2,128,449 - SGL_RS11920 0.79 +1.3
2,128,496 + -0.0
2,128,496 + +0.0
2,128,533 - -0.0
2,128,677 - -1.0
2,128,990 - SGL_RS11925 0.10 -0.5
2,128,997 + SGL_RS11925 0.11 -0.1
2,129,002 + SGL_RS11925 0.11 -0.5
2,129,005 - SGL_RS11925 0.11 -0.7
2,129,005 - SGL_RS11925 0.11 -1.0
2,129,099 - SGL_RS11925 0.15 -1.2
2,129,199 - SGL_RS11925 0.20 -0.7
2,129,354 - SGL_RS11925 0.27 -0.1
2,129,478 - SGL_RS11925 0.33 -0.4
2,129,564 - SGL_RS11925 0.37 -0.3
2,129,701 - SGL_RS11925 0.43 -0.2
2,129,973 - SGL_RS11925 0.55 -0.4
2,130,130 + SGL_RS11925 0.63 -1.2
2,130,205 + SGL_RS11925 0.66 -0.2
2,130,239 + SGL_RS11925 0.68 -0.5
2,130,262 + SGL_RS11925 0.69 +0.1
2,130,389 - SGL_RS11925 0.75 +0.1
2,130,799 - -0.1
2,130,896 + -1.2
2,131,150 - SGL_RS11930 0.10 -0.1

Or see this region's nucleotide sequence