Experiment: nitrite (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS11915 and SGL_RS11920 are separated by 40 nucleotides SGL_RS11920 and SGL_RS11925 are separated by 242 nucleotides SGL_RS11925 and SGL_RS11930 are separated by 163 nucleotides SGL_RS11930 and SGL_RS11935 are separated by 76 nucleotides
SGL_RS11915: SGL_RS11915 - 30S ribosomal protein S16, at 2,127,879 to 2,128,127
_RS11915
SGL_RS11920: SGL_RS11920 - KH domain-containing protein, at 2,128,168 to 2,128,524
_RS11920
SGL_RS11925: SGL_RS11925 - glutamine synthetase III, at 2,128,767 to 2,130,941
_RS11925
SGL_RS11930: SGL_RS11930 - DUF29 domain-containing protein, at 2,131,105 to 2,131,539
_RS11930
SGL_RS11935: SGL_RS11935 - photosystem II cytochrome c-550, at 2,131,616 to 2,132,098
_RS11935
Position (kb)
2128
2129
2130
2131 Strain fitness (log2 ratio)
-1
0
1 at 2128.156 kb on + strand at 2128.182 kb on - strand at 2128.441 kb on + strand, within SGL_RS11920 at 2128.449 kb on - strand, within SGL_RS11920 at 2128.496 kb on + strand at 2128.496 kb on + strand at 2128.533 kb on - strand at 2128.677 kb on - strand at 2128.990 kb on - strand, within SGL_RS11925 at 2128.997 kb on + strand, within SGL_RS11925 at 2129.002 kb on + strand, within SGL_RS11925 at 2129.005 kb on - strand, within SGL_RS11925 at 2129.005 kb on - strand, within SGL_RS11925 at 2129.099 kb on - strand, within SGL_RS11925 at 2129.199 kb on - strand, within SGL_RS11925 at 2129.354 kb on - strand, within SGL_RS11925 at 2129.478 kb on - strand, within SGL_RS11925 at 2129.564 kb on - strand, within SGL_RS11925 at 2129.701 kb on - strand, within SGL_RS11925 at 2129.973 kb on - strand, within SGL_RS11925 at 2130.130 kb on + strand, within SGL_RS11925 at 2130.205 kb on + strand, within SGL_RS11925 at 2130.239 kb on + strand, within SGL_RS11925 at 2130.262 kb on + strand, within SGL_RS11925 at 2130.389 kb on - strand, within SGL_RS11925 at 2130.799 kb on - strand at 2130.896 kb on + strand at 2131.150 kb on - strand, within SGL_RS11930
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite (N) remove 2,128,156 + +0.8 2,128,182 - +1.2 2,128,441 + SGL_RS11920 0.76 +1.0 2,128,449 - SGL_RS11920 0.79 +1.3 2,128,496 + -0.0 2,128,496 + +0.0 2,128,533 - -0.0 2,128,677 - -1.0 2,128,990 - SGL_RS11925 0.10 -0.5 2,128,997 + SGL_RS11925 0.11 -0.1 2,129,002 + SGL_RS11925 0.11 -0.5 2,129,005 - SGL_RS11925 0.11 -0.7 2,129,005 - SGL_RS11925 0.11 -1.0 2,129,099 - SGL_RS11925 0.15 -1.2 2,129,199 - SGL_RS11925 0.20 -0.7 2,129,354 - SGL_RS11925 0.27 -0.1 2,129,478 - SGL_RS11925 0.33 -0.4 2,129,564 - SGL_RS11925 0.37 -0.3 2,129,701 - SGL_RS11925 0.43 -0.2 2,129,973 - SGL_RS11925 0.55 -0.4 2,130,130 + SGL_RS11925 0.63 -1.2 2,130,205 + SGL_RS11925 0.66 -0.2 2,130,239 + SGL_RS11925 0.68 -0.5 2,130,262 + SGL_RS11925 0.69 +0.1 2,130,389 - SGL_RS11925 0.75 +0.1 2,130,799 - -0.1 2,130,896 + -1.2 2,131,150 - SGL_RS11930 0.10 -0.1
Or see this region's nucleotide sequence