Experiment: nitrite (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS11500 and SGL_RS11505 are separated by 116 nucleotides SGL_RS11505 and SGL_RS11510 are separated by 14 nucleotides SGL_RS11510 and SGL_RS11515 are separated by 10 nucleotides SGL_RS11515 and SGL_RS11520 are separated by 118 nucleotides
SGL_RS11500: SGL_RS11500 - glycoside hydrolase family 3 N-terminal domain-containing protein, at 2,036,911 to 2,038,527
_RS11500
SGL_RS11505: SGL_RS11505 - NUDIX domain-containing protein, at 2,038,644 to 2,039,063
_RS11505
SGL_RS11510: SGL_RS11510 - dihydroneopterin aldolase, at 2,039,078 to 2,039,530
_RS11510
SGL_RS11515: SGL_RS11515 - LysE family transporter, at 2,039,541 to 2,040,161
_RS11515
SGL_RS11520: SGL_RS11520 - molybdopterin-synthase adenylyltransferase MoeB, at 2,040,280 to 2,041,458
_RS11520
Position (kb)
2039
2040 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 2038.132 kb on - strand, within SGL_RS11500 at 2038.204 kb on + strand, within SGL_RS11500 at 2038.204 kb on + strand, within SGL_RS11500 at 2038.212 kb on - strand, within SGL_RS11500 at 2038.251 kb on + strand, within SGL_RS11500 at 2038.327 kb on + strand, within SGL_RS11500 at 2038.887 kb on + strand, within SGL_RS11505 at 2038.969 kb on - strand, within SGL_RS11505 at 2039.227 kb on - strand, within SGL_RS11510 at 2039.277 kb on + strand, within SGL_RS11510 at 2039.292 kb on + strand, within SGL_RS11510 at 2039.300 kb on - strand, within SGL_RS11510 at 2039.377 kb on + strand, within SGL_RS11510 at 2039.661 kb on - strand, within SGL_RS11515 at 2039.875 kb on + strand, within SGL_RS11515 at 2039.934 kb on + strand, within SGL_RS11515 at 2040.002 kb on - strand, within SGL_RS11515 at 2040.074 kb on - strand, within SGL_RS11515 at 2040.278 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite (N) remove 2,038,132 - SGL_RS11500 0.76 +3.5 2,038,204 + SGL_RS11500 0.80 +3.5 2,038,204 + SGL_RS11500 0.80 +3.9 2,038,212 - SGL_RS11500 0.80 +3.5 2,038,251 + SGL_RS11500 0.83 +3.7 2,038,327 + SGL_RS11500 0.88 +3.8 2,038,887 + SGL_RS11505 0.58 -3.1 2,038,969 - SGL_RS11505 0.77 -0.5 2,039,227 - SGL_RS11510 0.33 -3.6 2,039,277 + SGL_RS11510 0.44 -2.5 2,039,292 + SGL_RS11510 0.47 -2.7 2,039,300 - SGL_RS11510 0.49 -2.9 2,039,377 + SGL_RS11510 0.66 -3.0 2,039,661 - SGL_RS11515 0.19 -0.2 2,039,875 + SGL_RS11515 0.54 +0.4 2,039,934 + SGL_RS11515 0.63 +0.3 2,040,002 - SGL_RS11515 0.74 +0.6 2,040,074 - SGL_RS11515 0.86 -0.2 2,040,278 + -0.2
Or see this region's nucleotide sequence