Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS11505

Experiment: nitrite (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS11500 and SGL_RS11505 are separated by 116 nucleotidesSGL_RS11505 and SGL_RS11510 are separated by 14 nucleotidesSGL_RS11510 and SGL_RS11515 are separated by 10 nucleotides SGL_RS11500: SGL_RS11500 - glycoside hydrolase family 3 N-terminal domain-containing protein, at 2,036,911 to 2,038,527 _RS11500 SGL_RS11505: SGL_RS11505 - NUDIX domain-containing protein, at 2,038,644 to 2,039,063 _RS11505 SGL_RS11510: SGL_RS11510 - dihydroneopterin aldolase, at 2,039,078 to 2,039,530 _RS11510 SGL_RS11515: SGL_RS11515 - LysE family transporter, at 2,039,541 to 2,040,161 _RS11515 Position (kb) 2038 2039 2040Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2037.829 kb on + strand, within SGL_RS11500at 2037.867 kb on + strand, within SGL_RS11500at 2038.132 kb on - strand, within SGL_RS11500at 2038.204 kb on + strand, within SGL_RS11500at 2038.204 kb on + strand, within SGL_RS11500at 2038.212 kb on - strand, within SGL_RS11500at 2038.251 kb on + strand, within SGL_RS11500at 2038.327 kb on + strand, within SGL_RS11500at 2038.887 kb on + strand, within SGL_RS11505at 2038.969 kb on - strand, within SGL_RS11505at 2039.227 kb on - strand, within SGL_RS11510at 2039.277 kb on + strand, within SGL_RS11510at 2039.292 kb on + strand, within SGL_RS11510at 2039.300 kb on - strand, within SGL_RS11510at 2039.377 kb on + strand, within SGL_RS11510at 2039.661 kb on - strand, within SGL_RS11515at 2039.875 kb on + strand, within SGL_RS11515at 2039.934 kb on + strand, within SGL_RS11515at 2040.002 kb on - strand, within SGL_RS11515

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrite (N)
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2,037,829 + SGL_RS11500 0.57 +3.5
2,037,867 + SGL_RS11500 0.59 +3.6
2,038,132 - SGL_RS11500 0.76 +3.5
2,038,204 + SGL_RS11500 0.80 +3.5
2,038,204 + SGL_RS11500 0.80 +3.9
2,038,212 - SGL_RS11500 0.80 +3.5
2,038,251 + SGL_RS11500 0.83 +3.7
2,038,327 + SGL_RS11500 0.88 +3.8
2,038,887 + SGL_RS11505 0.58 -3.1
2,038,969 - SGL_RS11505 0.77 -0.5
2,039,227 - SGL_RS11510 0.33 -3.6
2,039,277 + SGL_RS11510 0.44 -2.5
2,039,292 + SGL_RS11510 0.47 -2.7
2,039,300 - SGL_RS11510 0.49 -2.9
2,039,377 + SGL_RS11510 0.66 -3.0
2,039,661 - SGL_RS11515 0.19 -0.2
2,039,875 + SGL_RS11515 0.54 +0.4
2,039,934 + SGL_RS11515 0.63 +0.3
2,040,002 - SGL_RS11515 0.74 +0.6

Or see this region's nucleotide sequence