Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS10865

Experiment: nitrite (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS18905 and SGL_RS19895 overlap by 91 nucleotidesSGL_RS19895 and SGL_RS10865 are separated by 204 nucleotidesSGL_RS10865 and SGL_RS10870 are separated by 100 nucleotides SGL_RS18905: SGL_RS18905 - IS630 family transposase, at 1,901,385 to 1,901,963 _RS18905 SGL_RS19895: SGL_RS19895 - IS630 transposase-related protein, at 1,901,873 to 1,902,232 _RS19895 SGL_RS10865: SGL_RS10865 - Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB, at 1,902,437 to 1,903,924 _RS10865 SGL_RS10870: SGL_RS10870 - penicillin-binding protein 1A, at 1,904,025 to 1,905,977 _RS10870 Position (kb) 1902 1903 1904Strain fitness (log2 ratio) -1 0 1 2 3at 1903.994 kb on + strandat 1904.002 kb on - strandat 1904.092 kb on + strandat 1904.285 kb on + strand, within SGL_RS10870at 1904.293 kb on - strand, within SGL_RS10870at 1904.293 kb on - strand, within SGL_RS10870at 1904.425 kb on - strand, within SGL_RS10870at 1904.450 kb on - strand, within SGL_RS10870at 1904.481 kb on + strand, within SGL_RS10870at 1904.483 kb on - strand, within SGL_RS10870at 1904.488 kb on + strand, within SGL_RS10870at 1904.496 kb on - strand, within SGL_RS10870at 1904.496 kb on - strand, within SGL_RS10870at 1904.496 kb on - strand, within SGL_RS10870at 1904.549 kb on - strand, within SGL_RS10870at 1904.610 kb on - strand, within SGL_RS10870at 1904.708 kb on - strand, within SGL_RS10870at 1904.772 kb on + strand, within SGL_RS10870

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction nitrite (N)
remove
1,903,994 + -0.1
1,904,002 - -0.2
1,904,092 + +1.7
1,904,285 + SGL_RS10870 0.13 +1.1
1,904,293 - SGL_RS10870 0.14 +1.1
1,904,293 - SGL_RS10870 0.14 +1.5
1,904,425 - SGL_RS10870 0.20 +2.0
1,904,450 - SGL_RS10870 0.22 +1.4
1,904,481 + SGL_RS10870 0.23 +1.1
1,904,483 - SGL_RS10870 0.23 +2.0
1,904,488 + SGL_RS10870 0.24 +1.4
1,904,496 - SGL_RS10870 0.24 +0.8
1,904,496 - SGL_RS10870 0.24 +1.0
1,904,496 - SGL_RS10870 0.24 +1.7
1,904,549 - SGL_RS10870 0.27 +1.5
1,904,610 - SGL_RS10870 0.30 +1.6
1,904,708 - SGL_RS10870 0.35 +1.3
1,904,772 + SGL_RS10870 0.38 +3.5

Or see this region's nucleotide sequence