Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS10370

Experiment: nitrite (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS10360 and SGL_RS10365 are separated by 69 nucleotidesSGL_RS10365 and SGL_RS10370 overlap by 97 nucleotidesSGL_RS10370 and SGL_RS10375 are separated by 5 nucleotidesSGL_RS10375 and SGL_RS10380 are separated by 61 nucleotides SGL_RS10360: SGL_RS10360 - hypothetical protein, at 1,798,804 to 1,799,538 _RS10360 SGL_RS10365: SGL_RS10365 - CbiQ family ECF transporter T component, at 1,799,608 to 1,800,483 _RS10365 SGL_RS10370: SGL_RS10370 - anthranilate synthase component I, at 1,800,387 to 1,801,844 _RS10370 SGL_RS10375: SGL_RS10375 - EI24 domain-containing protein, at 1,801,850 to 1,802,680 _RS10375 SGL_RS10380: SGL_RS10380 - oxygen-independent coproporphyrinogen III oxidase, at 1,802,742 to 1,804,142 _RS10380 Position (kb) 1800 1801 1802Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1799.423 kb on - strand, within SGL_RS10360at 1799.476 kb on + strandat 1799.481 kb on + strandat 1799.491 kb on - strandat 1799.613 kb on - strandat 1801.049 kb on + strand, within SGL_RS10370at 1801.119 kb on - strand, within SGL_RS10370at 1801.309 kb on + strand, within SGL_RS10370at 1801.428 kb on + strand, within SGL_RS10370at 1801.486 kb on - strand, within SGL_RS10370at 1801.677 kb on - strand, within SGL_RS10370at 1801.731 kb on - strandat 1802.075 kb on + strand, within SGL_RS10375at 1802.496 kb on + strand, within SGL_RS10375at 1802.843 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrite (N)
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1,799,423 - SGL_RS10360 0.84 +1.5
1,799,476 + +0.2
1,799,481 + -0.7
1,799,491 - +0.6
1,799,613 - -4.6
1,801,049 + SGL_RS10370 0.45 -2.1
1,801,119 - SGL_RS10370 0.50 -3.8
1,801,309 + SGL_RS10370 0.63 -2.9
1,801,428 + SGL_RS10370 0.71 -5.7
1,801,486 - SGL_RS10370 0.75 -5.6
1,801,677 - SGL_RS10370 0.88 -4.5
1,801,731 - -3.1
1,802,075 + SGL_RS10375 0.27 +0.4
1,802,496 + SGL_RS10375 0.78 -0.3
1,802,843 + +0.3

Or see this region's nucleotide sequence