Experiment: nitrite (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS10005 and SGL_RS10010 are separated by 224 nucleotides SGL_RS10010 and SGL_RS10015 are separated by 185 nucleotides SGL_RS10015 and SGL_RS10020 are separated by 26 nucleotides SGL_RS10020 and SGL_RS18875 are separated by 252 nucleotides
SGL_RS10005: SGL_RS10005 - 30S ribosomal protein S2, at 1,722,160 to 1,722,969
_RS10005
SGL_RS10010: SGL_RS10010 - tRNA-Ile, at 1,723,194 to 1,723,266
_RS10010
SGL_RS10015: SGL_RS10015 - calcium/proton exchanger, at 1,723,452 to 1,724,570
_RS10015
SGL_RS10020: SGL_RS10020 - dCTP deaminase, at 1,724,597 to 1,725,178
_RS10020
SGL_RS18875: SGL_RS18875 - IS630 family transposase, at 1,725,431 to 1,726,009
_RS18875
Position (kb)
1723
1724
1725 Strain fitness (log2 ratio)
-1
0
1 at 1723.356 kb on - strand at 1723.358 kb on + strand at 1723.510 kb on - strand at 1723.581 kb on + strand, within SGL_RS10015 at 1723.612 kb on - strand, within SGL_RS10015 at 1723.653 kb on + strand, within SGL_RS10015 at 1723.726 kb on - strand, within SGL_RS10015 at 1723.726 kb on - strand, within SGL_RS10015 at 1723.741 kb on + strand, within SGL_RS10015 at 1723.911 kb on - strand, within SGL_RS10015 at 1723.956 kb on + strand, within SGL_RS10015 at 1723.966 kb on + strand, within SGL_RS10015 at 1724.002 kb on - strand, within SGL_RS10015 at 1724.151 kb on - strand, within SGL_RS10015 at 1724.157 kb on - strand, within SGL_RS10015 at 1724.182 kb on + strand, within SGL_RS10015 at 1724.207 kb on + strand, within SGL_RS10015 at 1724.232 kb on + strand, within SGL_RS10015 at 1724.238 kb on + strand, within SGL_RS10015 at 1724.268 kb on - strand, within SGL_RS10015 at 1724.270 kb on + strand, within SGL_RS10015 at 1724.320 kb on - strand, within SGL_RS10015 at 1724.320 kb on - strand, within SGL_RS10015 at 1724.399 kb on + strand, within SGL_RS10015 at 1724.414 kb on - strand, within SGL_RS10015 at 1724.481 kb on - strand at 1724.502 kb on - strand at 1724.595 kb on + strand at 1725.257 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite (N) remove 1,723,356 - -0.2 1,723,358 + +1.0 1,723,510 - +0.0 1,723,581 + SGL_RS10015 0.12 -0.2 1,723,612 - SGL_RS10015 0.14 -0.9 1,723,653 + SGL_RS10015 0.18 -0.2 1,723,726 - SGL_RS10015 0.24 +0.7 1,723,726 - SGL_RS10015 0.24 -0.3 1,723,741 + SGL_RS10015 0.26 -0.2 1,723,911 - SGL_RS10015 0.41 -0.5 1,723,956 + SGL_RS10015 0.45 -0.0 1,723,966 + SGL_RS10015 0.46 +0.6 1,724,002 - SGL_RS10015 0.49 -0.4 1,724,151 - SGL_RS10015 0.62 -0.6 1,724,157 - SGL_RS10015 0.63 +0.0 1,724,182 + SGL_RS10015 0.65 -1.3 1,724,207 + SGL_RS10015 0.67 +0.0 1,724,232 + SGL_RS10015 0.70 -0.4 1,724,238 + SGL_RS10015 0.70 -0.6 1,724,268 - SGL_RS10015 0.73 -0.8 1,724,270 + SGL_RS10015 0.73 -0.4 1,724,320 - SGL_RS10015 0.78 +0.1 1,724,320 - SGL_RS10015 0.78 +0.2 1,724,399 + SGL_RS10015 0.85 -0.2 1,724,414 - SGL_RS10015 0.86 +0.1 1,724,481 - -0.6 1,724,502 - -0.3 1,724,595 + -0.6 1,725,257 + -0.0
Or see this region's nucleotide sequence