Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS08215

Experiment: nitrite (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS08210 and SGL_RS08215 are separated by 54 nucleotidesSGL_RS08215 and SGL_RS08220 are separated by 217 nucleotides SGL_RS08210: SGL_RS08210 - chromosomal replication initiator protein DnaA, at 1,350,236 to 1,351,579 _RS08210 SGL_RS08215: SGL_RS08215 - YidH family protein, at 1,351,634 to 1,352,038 _RS08215 SGL_RS08220: SGL_RS08220 - phosphoribosylglycinamide formyltransferase 2, at 1,352,256 to 1,353,431 _RS08220 Position (kb) 1351 1352 1353Strain fitness (log2 ratio) -2 -1 0 1 2at 1350.650 kb on - strand, within SGL_RS08210at 1350.666 kb on + strand, within SGL_RS08210at 1350.678 kb on + strand, within SGL_RS08210at 1350.686 kb on - strand, within SGL_RS08210at 1350.686 kb on - strand, within SGL_RS08210at 1350.686 kb on - strand, within SGL_RS08210at 1350.686 kb on - strand, within SGL_RS08210at 1350.854 kb on + strand, within SGL_RS08210at 1350.862 kb on - strand, within SGL_RS08210at 1350.918 kb on + strand, within SGL_RS08210at 1351.017 kb on + strand, within SGL_RS08210at 1351.124 kb on + strand, within SGL_RS08210at 1351.124 kb on + strand, within SGL_RS08210at 1351.132 kb on - strand, within SGL_RS08210at 1351.300 kb on - strand, within SGL_RS08210at 1351.300 kb on - strand, within SGL_RS08210at 1351.305 kb on - strand, within SGL_RS08210at 1351.312 kb on - strand, within SGL_RS08210at 1351.312 kb on - strand, within SGL_RS08210at 1351.346 kb on - strand, within SGL_RS08210at 1351.349 kb on - strand, within SGL_RS08210at 1351.356 kb on - strand, within SGL_RS08210at 1351.361 kb on + strand, within SGL_RS08210at 1351.369 kb on - strand, within SGL_RS08210at 1351.369 kb on - strand, within SGL_RS08210at 1351.432 kb on - strand, within SGL_RS08210at 1351.432 kb on - strand, within SGL_RS08210at 1351.432 kb on - strand, within SGL_RS08210at 1351.542 kb on + strandat 1351.800 kb on - strand, within SGL_RS08215at 1351.832 kb on - strand, within SGL_RS08215at 1351.906 kb on + strand, within SGL_RS08215at 1351.906 kb on + strand, within SGL_RS08215at 1351.921 kb on + strand, within SGL_RS08215at 1351.953 kb on - strand, within SGL_RS08215at 1352.011 kb on + strandat 1352.040 kb on + strandat 1352.129 kb on - strandat 1352.163 kb on + strandat 1352.185 kb on + strandat 1352.193 kb on - strandat 1352.235 kb on - strandat 1352.258 kb on + strandat 1352.312 kb on - strandat 1352.369 kb on + strandat 1352.372 kb on + strandat 1352.480 kb on - strand, within SGL_RS08220at 1352.626 kb on + strand, within SGL_RS08220at 1352.662 kb on + strand, within SGL_RS08220at 1352.670 kb on + strand, within SGL_RS08220at 1352.672 kb on + strand, within SGL_RS08220at 1352.742 kb on + strand, within SGL_RS08220at 1352.771 kb on + strand, within SGL_RS08220at 1352.859 kb on - strand, within SGL_RS08220

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrite (N)
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1,350,650 - SGL_RS08210 0.31 +0.0
1,350,666 + SGL_RS08210 0.32 +0.2
1,350,678 + SGL_RS08210 0.33 -0.3
1,350,686 - SGL_RS08210 0.33 +0.1
1,350,686 - SGL_RS08210 0.33 +0.4
1,350,686 - SGL_RS08210 0.33 -0.1
1,350,686 - SGL_RS08210 0.33 +0.4
1,350,854 + SGL_RS08210 0.46 -0.6
1,350,862 - SGL_RS08210 0.47 +0.2
1,350,918 + SGL_RS08210 0.51 -0.0
1,351,017 + SGL_RS08210 0.58 +0.4
1,351,124 + SGL_RS08210 0.66 -0.4
1,351,124 + SGL_RS08210 0.66 +0.8
1,351,132 - SGL_RS08210 0.67 +1.4
1,351,300 - SGL_RS08210 0.79 +0.5
1,351,300 - SGL_RS08210 0.79 -0.1
1,351,305 - SGL_RS08210 0.80 -0.5
1,351,312 - SGL_RS08210 0.80 -0.3
1,351,312 - SGL_RS08210 0.80 -1.8
1,351,346 - SGL_RS08210 0.83 +0.0
1,351,349 - SGL_RS08210 0.83 +0.4
1,351,356 - SGL_RS08210 0.83 +0.1
1,351,361 + SGL_RS08210 0.84 -0.1
1,351,369 - SGL_RS08210 0.84 +0.4
1,351,369 - SGL_RS08210 0.84 +0.8
1,351,432 - SGL_RS08210 0.89 +0.0
1,351,432 - SGL_RS08210 0.89 -0.3
1,351,432 - SGL_RS08210 0.89 +1.7
1,351,542 + +0.5
1,351,800 - SGL_RS08215 0.41 +1.9
1,351,832 - SGL_RS08215 0.49 +1.7
1,351,906 + SGL_RS08215 0.67 +1.9
1,351,906 + SGL_RS08215 0.67 +1.7
1,351,921 + SGL_RS08215 0.71 +2.4
1,351,953 - SGL_RS08215 0.79 +1.6
1,352,011 + +1.3
1,352,040 + -0.7
1,352,129 - +0.1
1,352,163 + +1.5
1,352,185 + +1.2
1,352,193 - +0.6
1,352,235 - +1.4
1,352,258 + -0.6
1,352,312 - -0.7
1,352,369 + +0.1
1,352,372 + +0.5
1,352,480 - SGL_RS08220 0.19 +0.1
1,352,626 + SGL_RS08220 0.31 +0.2
1,352,662 + SGL_RS08220 0.35 -0.2
1,352,670 + SGL_RS08220 0.35 -0.0
1,352,672 + SGL_RS08220 0.35 +0.0
1,352,742 + SGL_RS08220 0.41 +1.5
1,352,771 + SGL_RS08220 0.44 +0.9
1,352,859 - SGL_RS08220 0.51 -0.1

Or see this region's nucleotide sequence