Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS07680

Experiment: nitrite (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS07675 and SGL_RS07680 are separated by 204 nucleotidesSGL_RS07680 and SGL_RS07685 are separated by 159 nucleotidesSGL_RS07685 and SGL_RS07690 are separated by 284 nucleotides SGL_RS07675: SGL_RS07675 - HpsJ family protein, at 1,241,313 to 1,242,131 _RS07675 SGL_RS07680: SGL_RS07680 - DUF3143 domain-containing protein, at 1,242,336 to 1,242,605 _RS07680 SGL_RS07685: SGL_RS07685 - Calvin cycle protein CP12, at 1,242,765 to 1,242,989 _RS07685 SGL_RS07690: SGL_RS07690 - tryptophan--tRNA ligase, at 1,243,274 to 1,244,287 _RS07690 Position (kb) 1242 1243Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1241.746 kb on - strand, within SGL_RS07675at 1241.780 kb on - strand, within SGL_RS07675at 1241.793 kb on - strand, within SGL_RS07675at 1241.841 kb on + strand, within SGL_RS07675at 1241.923 kb on + strand, within SGL_RS07675at 1241.979 kb on - strand, within SGL_RS07675at 1242.150 kb on - strandat 1242.271 kb on - strandat 1242.417 kb on + strand, within SGL_RS07680at 1242.448 kb on - strand, within SGL_RS07680at 1242.668 kb on - strandat 1242.791 kb on - strand, within SGL_RS07685at 1242.791 kb on - strand, within SGL_RS07685at 1243.010 kb on + strandat 1243.020 kb on + strandat 1243.020 kb on + strandat 1243.026 kb on + strandat 1243.054 kb on + strandat 1243.054 kb on + strandat 1243.202 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrite (N)
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1,241,746 - SGL_RS07675 0.53 -1.0
1,241,780 - SGL_RS07675 0.57 -1.1
1,241,793 - SGL_RS07675 0.59 -1.3
1,241,841 + SGL_RS07675 0.64 -2.8
1,241,923 + SGL_RS07675 0.74 -1.7
1,241,979 - SGL_RS07675 0.81 -0.7
1,242,150 - -0.9
1,242,271 - +0.9
1,242,417 + SGL_RS07680 0.30 +1.1
1,242,448 - SGL_RS07680 0.41 +1.3
1,242,668 - +0.3
1,242,791 - SGL_RS07685 0.12 +3.8
1,242,791 - SGL_RS07685 0.12 +2.9
1,243,010 + +3.2
1,243,020 + +2.7
1,243,020 + +3.0
1,243,026 + +3.5
1,243,054 + +0.5
1,243,054 + +1.0
1,243,202 - +2.4

Or see this region's nucleotide sequence