Experiment: nitrite (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS07520 and SGL_RS07525 are separated by 229 nucleotides SGL_RS07525 and SGL_RS07530 are separated by 49 nucleotides SGL_RS07530 and SGL_RS07535 are separated by 129 nucleotides
SGL_RS07520: SGL_RS07520 - NYN domain-containing protein, at 1,214,188 to 1,214,937
_RS07520
SGL_RS07525: SGL_RS07525 - CDGSH iron-sulfur domain-containing protein, at 1,215,167 to 1,215,403
_RS07525
SGL_RS07530: SGL_RS07530 - pirin family protein, at 1,215,453 to 1,216,151
_RS07530
SGL_RS07535: SGL_RS07535 - LysR family transcriptional regulator, at 1,216,281 to 1,217,168
_RS07535
Position (kb) 1215
1216 Strain fitness (log2 ratio) -1
0
1
2 at 1214.313 kb on - strand, within SGL_RS07520 at 1214.366 kb on - strand, within SGL_RS07520 at 1214.499 kb on - strand, within SGL_RS07520 at 1214.557 kb on - strand, within SGL_RS07520 at 1215.336 kb on + strand, within SGL_RS07525 at 1215.344 kb on - strand, within SGL_RS07525 at 1215.450 kb on + strand at 1215.451 kb on + strand at 1215.458 kb on - strand at 1215.587 kb on + strand, within SGL_RS07530 at 1215.634 kb on - strand, within SGL_RS07530 at 1215.639 kb on + strand, within SGL_RS07530 at 1215.725 kb on - strand, within SGL_RS07530 at 1215.785 kb on + strand, within SGL_RS07530 at 1215.793 kb on - strand, within SGL_RS07530 at 1215.872 kb on - strand, within SGL_RS07530 at 1215.876 kb on + strand, within SGL_RS07530 at 1215.879 kb on - strand, within SGL_RS07530 at 1216.119 kb on + strand at 1216.144 kb on - strand at 1216.362 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite (N) remove 1,214,313 - SGL_RS07520 0.17 +0.3 1,214,366 - SGL_RS07520 0.24 -0.4 1,214,499 - SGL_RS07520 0.41 -0.4 1,214,557 - SGL_RS07520 0.49 -0.7 1,215,336 + SGL_RS07525 0.71 -0.3 1,215,344 - SGL_RS07525 0.75 -0.4 1,215,450 + +0.2 1,215,451 + -0.3 1,215,458 - -0.1 1,215,587 + SGL_RS07530 0.19 +1.9 1,215,634 - SGL_RS07530 0.26 -0.3 1,215,639 + SGL_RS07530 0.27 +0.1 1,215,725 - SGL_RS07530 0.39 -0.5 1,215,785 + SGL_RS07530 0.47 -0.6 1,215,793 - SGL_RS07530 0.49 -0.6 1,215,872 - SGL_RS07530 0.60 +0.0 1,215,876 + SGL_RS07530 0.61 -0.1 1,215,879 - SGL_RS07530 0.61 -0.1 1,216,119 + -0.0 1,216,144 - +0.6 1,216,362 - -0.6
Or see this region's nucleotide sequence