Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS07525

Experiment: nitrite (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS07520 and SGL_RS07525 are separated by 229 nucleotidesSGL_RS07525 and SGL_RS07530 are separated by 49 nucleotidesSGL_RS07530 and SGL_RS07535 are separated by 129 nucleotides SGL_RS07520: SGL_RS07520 - NYN domain-containing protein, at 1,214,188 to 1,214,937 _RS07520 SGL_RS07525: SGL_RS07525 - CDGSH iron-sulfur domain-containing protein, at 1,215,167 to 1,215,403 _RS07525 SGL_RS07530: SGL_RS07530 - pirin family protein, at 1,215,453 to 1,216,151 _RS07530 SGL_RS07535: SGL_RS07535 - LysR family transcriptional regulator, at 1,216,281 to 1,217,168 _RS07535 Position (kb) 1215 1216Strain fitness (log2 ratio) -1 0 1 2at 1214.313 kb on - strand, within SGL_RS07520at 1214.366 kb on - strand, within SGL_RS07520at 1214.499 kb on - strand, within SGL_RS07520at 1214.557 kb on - strand, within SGL_RS07520at 1215.336 kb on + strand, within SGL_RS07525at 1215.344 kb on - strand, within SGL_RS07525at 1215.450 kb on + strandat 1215.451 kb on + strandat 1215.458 kb on - strandat 1215.587 kb on + strand, within SGL_RS07530at 1215.634 kb on - strand, within SGL_RS07530at 1215.639 kb on + strand, within SGL_RS07530at 1215.725 kb on - strand, within SGL_RS07530at 1215.785 kb on + strand, within SGL_RS07530at 1215.793 kb on - strand, within SGL_RS07530at 1215.872 kb on - strand, within SGL_RS07530at 1215.876 kb on + strand, within SGL_RS07530at 1215.879 kb on - strand, within SGL_RS07530at 1216.119 kb on + strandat 1216.144 kb on - strandat 1216.362 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrite (N)
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1,214,313 - SGL_RS07520 0.17 +0.3
1,214,366 - SGL_RS07520 0.24 -0.4
1,214,499 - SGL_RS07520 0.41 -0.4
1,214,557 - SGL_RS07520 0.49 -0.7
1,215,336 + SGL_RS07525 0.71 -0.3
1,215,344 - SGL_RS07525 0.75 -0.4
1,215,450 + +0.2
1,215,451 + -0.3
1,215,458 - -0.1
1,215,587 + SGL_RS07530 0.19 +1.9
1,215,634 - SGL_RS07530 0.26 -0.3
1,215,639 + SGL_RS07530 0.27 +0.1
1,215,725 - SGL_RS07530 0.39 -0.5
1,215,785 + SGL_RS07530 0.47 -0.6
1,215,793 - SGL_RS07530 0.49 -0.6
1,215,872 - SGL_RS07530 0.60 +0.0
1,215,876 + SGL_RS07530 0.61 -0.1
1,215,879 - SGL_RS07530 0.61 -0.1
1,216,119 + -0.0
1,216,144 - +0.6
1,216,362 - -0.6

Or see this region's nucleotide sequence