Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS07160

Experiment: nitrite (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS07150 and SGL_RS07155 are separated by 228 nucleotidesSGL_RS07155 and SGL_RS07160 are separated by 127 nucleotidesSGL_RS07160 and SGL_RS07165 are separated by 48 nucleotides SGL_RS07150: SGL_RS07150 - FAD/NAD(P)-binding oxidoreductase, at 1,133,879 to 1,135,108 _RS07150 SGL_RS07155: SGL_RS07155 - RNA-binding protein, at 1,135,337 to 1,135,588 _RS07155 SGL_RS07160: SGL_RS07160 - Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA, at 1,135,716 to 1,137,167 _RS07160 SGL_RS07165: SGL_RS07165 - M23 family metallopeptidase, at 1,137,216 to 1,138,112 _RS07165 Position (kb) 1135 1136 1137 1138Strain fitness (log2 ratio) -1 0 1at 1134.733 kb on + strand, within SGL_RS07150at 1134.875 kb on + strand, within SGL_RS07150at 1134.892 kb on - strand, within SGL_RS07150at 1134.902 kb on - strand, within SGL_RS07150at 1134.945 kb on + strand, within SGL_RS07150at 1135.051 kb on + strandat 1135.051 kb on + strandat 1135.059 kb on - strandat 1135.065 kb on + strandat 1135.073 kb on - strandat 1135.272 kb on - strandat 1135.413 kb on + strand, within SGL_RS07155at 1135.681 kb on - strandat 1137.347 kb on + strand, within SGL_RS07165at 1137.347 kb on + strand, within SGL_RS07165at 1137.447 kb on + strand, within SGL_RS07165at 1137.485 kb on + strand, within SGL_RS07165

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrite (N)
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1,134,733 + SGL_RS07150 0.69 +0.2
1,134,875 + SGL_RS07150 0.81 +1.0
1,134,892 - SGL_RS07150 0.82 +0.4
1,134,902 - SGL_RS07150 0.83 +0.8
1,134,945 + SGL_RS07150 0.87 +0.5
1,135,051 + +0.7
1,135,051 + +0.4
1,135,059 - +0.9
1,135,065 + +0.7
1,135,073 - +0.9
1,135,272 - +1.1
1,135,413 + SGL_RS07155 0.30 +0.7
1,135,681 - -0.2
1,137,347 + SGL_RS07165 0.15 +0.7
1,137,347 + SGL_RS07165 0.15 +0.1
1,137,447 + SGL_RS07165 0.26 -0.7
1,137,485 + SGL_RS07165 0.30 +0.6

Or see this region's nucleotide sequence