Experiment: nitrite (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS06520 and SGL_RS06525 are separated by 48 nucleotides SGL_RS06525 and SGL_RS06530 are separated by 52 nucleotides SGL_RS06530 and SGL_RS06535 are separated by 129 nucleotides SGL_RS06535 and SGL_RS06540 are separated by 115 nucleotides
SGL_RS06520: SGL_RS06520 - hydrogenase expression/formation protein HypE, at 991,735 to 992,772
_RS06520
SGL_RS06525: SGL_RS06525 - Uma2 family endonuclease, at 992,821 to 993,483
_RS06525
SGL_RS06530: SGL_RS06530 - 5'/3'-nucleotidase SurE, at 993,536 to 994,213
_RS06530
SGL_RS06535: SGL_RS06535 - peptide deformylase, at 994,343 to 994,906
_RS06535
SGL_RS06540: SGL_RS06540 - hypothetical protein, at 995,022 to 995,219
_RS06540
Position (kb) 993
994
995 Strain fitness (log2 ratio) -2
-1
0
1
2 at 992.585 kb on - strand, within SGL_RS06520 at 992.636 kb on + strand, within SGL_RS06520 at 992.656 kb on + strand, within SGL_RS06520 at 992.695 kb on + strand at 992.726 kb on - strand at 992.755 kb on + strand at 992.798 kb on + strand at 992.804 kb on - strand at 992.806 kb on - strand at 992.891 kb on + strand, within SGL_RS06525 at 993.031 kb on - strand, within SGL_RS06525 at 993.115 kb on - strand, within SGL_RS06525 at 993.212 kb on + strand, within SGL_RS06525 at 993.251 kb on + strand, within SGL_RS06525 at 993.290 kb on + strand, within SGL_RS06525 at 993.317 kb on + strand, within SGL_RS06525 at 993.419 kb on - strand at 993.542 kb on - strand at 993.614 kb on + strand, within SGL_RS06530 at 993.620 kb on - strand, within SGL_RS06530 at 993.654 kb on - strand, within SGL_RS06530 at 993.739 kb on - strand, within SGL_RS06530 at 993.744 kb on - strand, within SGL_RS06530 at 993.770 kb on - strand, within SGL_RS06530 at 993.836 kb on + strand, within SGL_RS06530 at 993.909 kb on + strand, within SGL_RS06530 at 994.007 kb on + strand, within SGL_RS06530 at 994.065 kb on + strand, within SGL_RS06530 at 994.095 kb on - strand, within SGL_RS06530 at 994.217 kb on + strand at 994.248 kb on - strand at 994.955 kb on + strand at 994.963 kb on - strand at 995.089 kb on + strand, within SGL_RS06540 at 995.099 kb on + strand, within SGL_RS06540
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite (N) remove 992,585 - SGL_RS06520 0.82 +0.1 992,636 + SGL_RS06520 0.87 +0.0 992,656 + SGL_RS06520 0.89 -0.2 992,695 + +1.9 992,726 - -0.6 992,755 + +0.1 992,798 + +0.9 992,804 - -0.7 992,806 - +0.0 992,891 + SGL_RS06525 0.11 -0.1 993,031 - SGL_RS06525 0.32 -0.1 993,115 - SGL_RS06525 0.44 +0.4 993,212 + SGL_RS06525 0.59 -0.1 993,251 + SGL_RS06525 0.65 +0.3 993,290 + SGL_RS06525 0.71 -0.4 993,317 + SGL_RS06525 0.75 +0.1 993,419 - -0.1 993,542 - +0.4 993,614 + SGL_RS06530 0.12 -0.1 993,620 - SGL_RS06530 0.12 -0.2 993,654 - SGL_RS06530 0.17 -0.1 993,739 - SGL_RS06530 0.30 +0.3 993,744 - SGL_RS06530 0.31 -0.4 993,770 - SGL_RS06530 0.35 +0.5 993,836 + SGL_RS06530 0.44 +0.1 993,909 + SGL_RS06530 0.55 -0.2 994,007 + SGL_RS06530 0.69 -1.0 994,065 + SGL_RS06530 0.78 +0.4 994,095 - SGL_RS06530 0.82 -0.5 994,217 + -0.4 994,248 - -2.1 994,955 + -0.7 994,963 - -0.5 995,089 + SGL_RS06540 0.34 +2.7 995,099 + SGL_RS06540 0.39 +1.7
Or see this region's nucleotide sequence