Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS06280

Experiment: nitrite (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS06270 and SGL_RS06275 are separated by 30 nucleotidesSGL_RS06275 and SGL_RS06280 are separated by 127 nucleotidesSGL_RS06280 and SGL_RS06285 are separated by 172 nucleotides SGL_RS06270: SGL_RS06270 - class III poly(R)-hydroxyalkanoic acid synthase subunit PhaC, at 933,196 to 934,293 _RS06270 SGL_RS06275: SGL_RS06275 - hypothetical protein, at 934,324 to 934,707 _RS06275 SGL_RS06280: SGL_RS06280 - fasciclin domain-containing protein, at 934,835 to 935,236 _RS06280 SGL_RS06285: SGL_RS06285 - CO2 hydration protein, at 935,409 to 936,704 _RS06285 Position (kb) 934 935 936Strain fitness (log2 ratio) -3 -2 -1 0 1at 934.190 kb on - strandat 934.313 kb on - strandat 934.330 kb on + strandat 934.424 kb on - strand, within SGL_RS06275at 934.646 kb on + strand, within SGL_RS06275at 934.657 kb on + strand, within SGL_RS06275at 934.789 kb on - strandat 934.810 kb on - strandat 935.031 kb on + strand, within SGL_RS06280at 935.110 kb on - strand, within SGL_RS06280at 935.142 kb on + strand, within SGL_RS06280at 935.142 kb on - strand, within SGL_RS06280at 935.142 kb on - strand, within SGL_RS06280at 935.142 kb on - strand, within SGL_RS06280at 935.835 kb on + strand, within SGL_RS06285at 935.859 kb on + strand, within SGL_RS06285at 936.065 kb on - strand, within SGL_RS06285

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrite (N)
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934,190 - -0.2
934,313 - +0.2
934,330 + -1.4
934,424 - SGL_RS06275 0.26 -3.6
934,646 + SGL_RS06275 0.84 -0.5
934,657 + SGL_RS06275 0.87 -0.2
934,789 - +0.1
934,810 - -0.9
935,031 + SGL_RS06280 0.49 +0.3
935,110 - SGL_RS06280 0.68 -0.1
935,142 + SGL_RS06280 0.76 -0.2
935,142 - SGL_RS06280 0.76 -0.9
935,142 - SGL_RS06280 0.76 +0.2
935,142 - SGL_RS06280 0.76 -1.0
935,835 + SGL_RS06285 0.33 -1.7
935,859 + SGL_RS06285 0.35 -0.4
936,065 - SGL_RS06285 0.51 -0.1

Or see this region's nucleotide sequence