Experiment: nitrite (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS06115 and SGL_RS06120 are separated by 163 nucleotides SGL_RS06120 and SGL_RS06125 are separated by 39 nucleotides SGL_RS06125 and SGL_RS06130 are separated by 6 nucleotides
SGL_RS06115: SGL_RS06115 - DUF1868 domain-containing protein, at 907,050 to 907,826
_RS06115
SGL_RS06120: SGL_RS06120 - hypothetical protein, at 907,990 to 908,313
_RS06120
SGL_RS06125: SGL_RS06125 - triacylglycerol lipase, at 908,353 to 908,961
_RS06125
SGL_RS06130: SGL_RS06130 - anti-sigma regulatory factor, at 908,968 to 909,483
_RS06130
Position (kb) 907
908
909 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 907.009 kb on - strand at 907.041 kb on - strand at 907.052 kb on + strand at 907.068 kb on + strand at 907.113 kb on - strand at 907.264 kb on - strand, within SGL_RS06115 at 907.319 kb on + strand, within SGL_RS06115 at 907.345 kb on + strand, within SGL_RS06115 at 907.345 kb on + strand, within SGL_RS06115 at 907.353 kb on - strand, within SGL_RS06115 at 907.359 kb on - strand, within SGL_RS06115 at 907.364 kb on - strand, within SGL_RS06115 at 907.431 kb on + strand, within SGL_RS06115 at 907.464 kb on - strand, within SGL_RS06115 at 907.482 kb on + strand, within SGL_RS06115 at 907.557 kb on - strand, within SGL_RS06115 at 907.618 kb on - strand, within SGL_RS06115 at 907.629 kb on + strand, within SGL_RS06115 at 907.630 kb on + strand, within SGL_RS06115 at 907.745 kb on + strand, within SGL_RS06115 at 907.751 kb on - strand at 908.092 kb on - strand, within SGL_RS06120 at 908.135 kb on + strand, within SGL_RS06120 at 908.388 kb on + strand at 908.433 kb on - strand, within SGL_RS06125 at 908.527 kb on - strand, within SGL_RS06125 at 908.578 kb on + strand, within SGL_RS06125 at 908.606 kb on - strand, within SGL_RS06125 at 908.616 kb on - strand, within SGL_RS06125 at 908.629 kb on - strand, within SGL_RS06125 at 908.824 kb on + strand, within SGL_RS06125 at 908.843 kb on - strand, within SGL_RS06125 at 908.843 kb on - strand, within SGL_RS06125 at 908.850 kb on - strand, within SGL_RS06125 at 908.860 kb on - strand, within SGL_RS06125 at 908.928 kb on - strand at 909.200 kb on - strand, within SGL_RS06130 at 909.221 kb on + strand, within SGL_RS06130 at 909.226 kb on + strand, within SGL_RS06130
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite (N) remove 907,009 - -1.6 907,041 - -0.9 907,052 + +1.0 907,068 + -1.0 907,113 - +1.0 907,264 - SGL_RS06115 0.28 -0.7 907,319 + SGL_RS06115 0.35 -0.8 907,345 + SGL_RS06115 0.38 -0.2 907,345 + SGL_RS06115 0.38 -0.4 907,353 - SGL_RS06115 0.39 -0.8 907,359 - SGL_RS06115 0.40 +0.0 907,364 - SGL_RS06115 0.40 -0.5 907,431 + SGL_RS06115 0.49 -1.5 907,464 - SGL_RS06115 0.53 -1.0 907,482 + SGL_RS06115 0.56 +0.8 907,557 - SGL_RS06115 0.65 -0.3 907,618 - SGL_RS06115 0.73 -0.9 907,629 + SGL_RS06115 0.75 -1.5 907,630 + SGL_RS06115 0.75 -0.2 907,745 + SGL_RS06115 0.89 -0.7 907,751 - -0.5 908,092 - SGL_RS06120 0.31 +0.9 908,135 + SGL_RS06120 0.45 +1.3 908,388 + -0.3 908,433 - SGL_RS06125 0.13 +0.4 908,527 - SGL_RS06125 0.29 -0.2 908,578 + SGL_RS06125 0.37 +0.1 908,606 - SGL_RS06125 0.42 -0.1 908,616 - SGL_RS06125 0.43 -1.5 908,629 - SGL_RS06125 0.45 -0.4 908,824 + SGL_RS06125 0.77 -0.5 908,843 - SGL_RS06125 0.80 +1.1 908,843 - SGL_RS06125 0.80 +0.3 908,850 - SGL_RS06125 0.82 -0.4 908,860 - SGL_RS06125 0.83 -0.1 908,928 - -0.2 909,200 - SGL_RS06130 0.45 -3.9 909,221 + SGL_RS06130 0.49 -4.2 909,226 + SGL_RS06130 0.50 -2.3
Or see this region's nucleotide sequence