Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS04690

Experiment: nitrite (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS04685 and SGL_RS04690 are separated by 185 nucleotidesSGL_RS04690 and SGL_RS04695 are separated by 236 nucleotidesSGL_RS04695 and SGL_RS20210 are separated by 254 nucleotides SGL_RS04685: SGL_RS04685 - molecular chaperone DnaK, at 600,942 to 603,257 _RS04685 SGL_RS04690: SGL_RS04690 - serine hydroxymethyltransferase, at 603,443 to 604,726 _RS04690 SGL_RS04695: SGL_RS04695 - IS1 family transposase, at 604,963 to 605,286 _RS04695 SGL_RS20210: SGL_RS20210 - IS630 family transposase, at 605,541 to 606,035 _RS20210 Position (kb) 603 604 605Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 603.355 kb on - strandat 604.860 kb on + strandat 604.930 kb on + strandat 605.005 kb on - strand, within SGL_RS04695at 605.054 kb on + strand, within SGL_RS04695at 605.061 kb on - strand, within SGL_RS04695at 605.204 kb on + strand, within SGL_RS04695at 605.481 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrite (N)
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603,355 - -4.4
604,860 + -0.3
604,930 + +0.1
605,005 - SGL_RS04695 0.13 +0.0
605,054 + SGL_RS04695 0.28 -0.3
605,061 - SGL_RS04695 0.30 -0.0
605,204 + SGL_RS04695 0.74 -0.3
605,481 - -0.7

Or see this region's nucleotide sequence