Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS04160

Experiment: nitrite (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS04155 and SGL_RS04160 are separated by 268 nucleotidesSGL_RS04160 and SGL_RS18685 are separated by 221 nucleotides SGL_RS04155: SGL_RS04155 - reverse transcriptase domain-containing protein, at 475,873 to 477,399 _RS04155 SGL_RS04160: SGL_RS04160 - glutamate synthase large subunit, at 477,668 to 482,320 _RS04160 SGL_RS18685: SGL_RS18685 - Uma2 family endonuclease, at 482,542 to 483,199 _RS18685 Position (kb) 477 478 479 480 481 482 483Strain fitness (log2 ratio) -3 -2 -1 0 1at 476.721 kb on - strand, within SGL_RS04155at 476.737 kb on + strand, within SGL_RS04155at 476.933 kb on + strand, within SGL_RS04155at 476.954 kb on + strand, within SGL_RS04155at 477.997 kb on - strandat 478.235 kb on - strand, within SGL_RS04160at 478.236 kb on - strand, within SGL_RS04160at 478.237 kb on - strand, within SGL_RS04160at 478.323 kb on - strand, within SGL_RS04160at 478.325 kb on - strand, within SGL_RS04160at 478.599 kb on + strand, within SGL_RS04160at 478.607 kb on - strand, within SGL_RS04160at 478.635 kb on - strand, within SGL_RS04160at 478.667 kb on - strand, within SGL_RS04160at 478.802 kb on - strand, within SGL_RS04160at 479.008 kb on - strand, within SGL_RS04160at 479.129 kb on + strand, within SGL_RS04160at 479.137 kb on - strand, within SGL_RS04160at 479.138 kb on - strand, within SGL_RS04160at 479.148 kb on - strand, within SGL_RS04160at 479.365 kb on + strand, within SGL_RS04160at 479.365 kb on - strand, within SGL_RS04160at 479.611 kb on - strand, within SGL_RS04160at 479.647 kb on - strand, within SGL_RS04160at 479.656 kb on - strand, within SGL_RS04160at 479.704 kb on + strand, within SGL_RS04160at 479.751 kb on + strand, within SGL_RS04160at 479.998 kb on + strand, within SGL_RS04160at 479.998 kb on + strand, within SGL_RS04160at 480.215 kb on + strand, within SGL_RS04160at 480.257 kb on + strand, within SGL_RS04160at 480.334 kb on - strand, within SGL_RS04160at 480.449 kb on - strand, within SGL_RS04160at 480.760 kb on + strand, within SGL_RS04160at 480.775 kb on + strand, within SGL_RS04160at 480.783 kb on - strand, within SGL_RS04160at 480.965 kb on - strand, within SGL_RS04160at 481.000 kb on + strand, within SGL_RS04160at 481.159 kb on - strand, within SGL_RS04160at 481.270 kb on + strand, within SGL_RS04160at 481.286 kb on - strand, within SGL_RS04160at 481.386 kb on - strand, within SGL_RS04160at 481.391 kb on - strand, within SGL_RS04160at 481.439 kb on - strand, within SGL_RS04160at 481.441 kb on + strand, within SGL_RS04160at 481.449 kb on - strand, within SGL_RS04160at 481.526 kb on - strand, within SGL_RS04160at 481.528 kb on + strand, within SGL_RS04160at 481.536 kb on - strand, within SGL_RS04160at 481.545 kb on + strand, within SGL_RS04160at 481.575 kb on - strand, within SGL_RS04160at 481.616 kb on + strand, within SGL_RS04160at 481.633 kb on - strand, within SGL_RS04160at 481.789 kb on - strand, within SGL_RS04160at 481.797 kb on + strand, within SGL_RS04160at 481.797 kb on + strand, within SGL_RS04160at 481.804 kb on + strand, within SGL_RS04160at 481.895 kb on + strandat 481.937 kb on - strandat 481.940 kb on + strandat 481.959 kb on + strandat 482.008 kb on - strandat 482.072 kb on - strandat 482.184 kb on - strandat 482.264 kb on + strandat 482.282 kb on - strandat 482.524 kb on - strandat 482.587 kb on + strandat 482.715 kb on + strand, within SGL_RS18685at 482.738 kb on + strand, within SGL_RS18685at 482.766 kb on + strand, within SGL_RS18685at 482.774 kb on - strand, within SGL_RS18685at 482.774 kb on - strand, within SGL_RS18685at 482.774 kb on - strand, within SGL_RS18685at 482.918 kb on + strand, within SGL_RS18685at 482.950 kb on - strand, within SGL_RS18685at 482.995 kb on + strand, within SGL_RS18685at 482.995 kb on + strand, within SGL_RS18685at 482.995 kb on + strand, within SGL_RS18685at 483.131 kb on + strand, within SGL_RS18685at 483.139 kb on - strandat 483.150 kb on - strandat 483.201 kb on - strandat 483.255 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrite (N)
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476,721 - SGL_RS04155 0.56 -3.2
476,737 + SGL_RS04155 0.57 -2.6
476,933 + SGL_RS04155 0.69 -3.1
476,954 + SGL_RS04155 0.71 -2.6
477,997 - -0.8
478,235 - SGL_RS04160 0.12 -0.9
478,236 - SGL_RS04160 0.12 +0.4
478,237 - SGL_RS04160 0.12 -1.4
478,323 - SGL_RS04160 0.14 -1.7
478,325 - SGL_RS04160 0.14 -0.6
478,599 + SGL_RS04160 0.20 -0.6
478,607 - SGL_RS04160 0.20 -2.0
478,635 - SGL_RS04160 0.21 -2.0
478,667 - SGL_RS04160 0.21 -1.2
478,802 - SGL_RS04160 0.24 -2.1
479,008 - SGL_RS04160 0.29 -1.9
479,129 + SGL_RS04160 0.31 -1.2
479,137 - SGL_RS04160 0.32 -0.3
479,138 - SGL_RS04160 0.32 -0.9
479,148 - SGL_RS04160 0.32 -1.5
479,365 + SGL_RS04160 0.36 +0.2
479,365 - SGL_RS04160 0.36 -0.2
479,611 - SGL_RS04160 0.42 -1.3
479,647 - SGL_RS04160 0.43 -2.8
479,656 - SGL_RS04160 0.43 -0.4
479,704 + SGL_RS04160 0.44 +0.2
479,751 + SGL_RS04160 0.45 -1.4
479,998 + SGL_RS04160 0.50 -1.0
479,998 + SGL_RS04160 0.50 +0.6
480,215 + SGL_RS04160 0.55 -0.9
480,257 + SGL_RS04160 0.56 -0.2
480,334 - SGL_RS04160 0.57 -1.0
480,449 - SGL_RS04160 0.60 -1.7
480,760 + SGL_RS04160 0.66 -0.8
480,775 + SGL_RS04160 0.67 -1.3
480,783 - SGL_RS04160 0.67 +1.1
480,965 - SGL_RS04160 0.71 -1.7
481,000 + SGL_RS04160 0.72 -1.1
481,159 - SGL_RS04160 0.75 -1.0
481,270 + SGL_RS04160 0.77 -1.1
481,286 - SGL_RS04160 0.78 +1.4
481,386 - SGL_RS04160 0.80 -1.6
481,391 - SGL_RS04160 0.80 -1.0
481,439 - SGL_RS04160 0.81 -2.2
481,441 + SGL_RS04160 0.81 -1.8
481,449 - SGL_RS04160 0.81 -1.5
481,526 - SGL_RS04160 0.83 -2.2
481,528 + SGL_RS04160 0.83 -1.2
481,536 - SGL_RS04160 0.83 -1.3
481,545 + SGL_RS04160 0.83 -1.1
481,575 - SGL_RS04160 0.84 -0.7
481,616 + SGL_RS04160 0.85 -2.3
481,633 - SGL_RS04160 0.85 -1.1
481,789 - SGL_RS04160 0.89 -3.1
481,797 + SGL_RS04160 0.89 -1.0
481,797 + SGL_RS04160 0.89 -1.8
481,804 + SGL_RS04160 0.89 -0.8
481,895 + -0.9
481,937 - -1.0
481,940 + +1.1
481,959 + -1.2
482,008 - -0.8
482,072 - -1.5
482,184 - -1.3
482,264 + +0.1
482,282 - -1.7
482,524 - +0.0
482,587 + -0.0
482,715 + SGL_RS18685 0.26 -0.3
482,738 + SGL_RS18685 0.30 -0.0
482,766 + SGL_RS18685 0.34 -0.7
482,774 - SGL_RS18685 0.35 -0.2
482,774 - SGL_RS18685 0.35 -0.3
482,774 - SGL_RS18685 0.35 +0.5
482,918 + SGL_RS18685 0.57 +0.5
482,950 - SGL_RS18685 0.62 -0.1
482,995 + SGL_RS18685 0.69 +0.0
482,995 + SGL_RS18685 0.69 +0.2
482,995 + SGL_RS18685 0.69 +0.0
483,131 + SGL_RS18685 0.90 +0.4
483,139 - +0.1
483,150 - -0.6
483,201 - -0.8
483,255 + -0.4

Or see this region's nucleotide sequence