Experiment: nitrite (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS04015 and SGL_RS04020 are separated by 265 nucleotides SGL_RS04020 and SGL_RS04025 are separated by 181 nucleotides
SGL_RS04015: SGL_RS04015 - cation:proton antiporter, at 453,214 to 454,446
_RS04015
SGL_RS04020: SGL_RS04020 - hypothetical protein, at 454,712 to 456,793
_RS04020
SGL_RS04025: SGL_RS04025 - proton extrusion protein PcxA, at 456,975 to 458,297
_RS04025
Position (kb) 454
455
456
457 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 453.753 kb on + strand, within SGL_RS04015 at 453.837 kb on - strand, within SGL_RS04015 at 453.861 kb on - strand, within SGL_RS04015 at 454.128 kb on + strand, within SGL_RS04015 at 454.174 kb on + strand, within SGL_RS04015 at 454.174 kb on + strand, within SGL_RS04015 at 454.174 kb on - strand, within SGL_RS04015 at 454.182 kb on - strand, within SGL_RS04015 at 454.264 kb on + strand, within SGL_RS04015 at 454.278 kb on - strand, within SGL_RS04015 at 454.314 kb on - strand, within SGL_RS04015 at 454.840 kb on - strand at 454.901 kb on - strand at 454.903 kb on + strand at 455.038 kb on + strand, within SGL_RS04020 at 455.180 kb on + strand, within SGL_RS04020 at 455.187 kb on + strand, within SGL_RS04020 at 455.188 kb on - strand, within SGL_RS04020 at 455.188 kb on - strand, within SGL_RS04020 at 455.188 kb on - strand, within SGL_RS04020 at 455.308 kb on - strand, within SGL_RS04020 at 455.308 kb on - strand, within SGL_RS04020 at 455.327 kb on + strand, within SGL_RS04020 at 455.341 kb on - strand, within SGL_RS04020 at 455.371 kb on - strand, within SGL_RS04020 at 455.435 kb on + strand, within SGL_RS04020 at 455.435 kb on + strand, within SGL_RS04020 at 455.450 kb on - strand, within SGL_RS04020 at 455.510 kb on - strand, within SGL_RS04020 at 455.569 kb on + strand, within SGL_RS04020 at 455.587 kb on + strand, within SGL_RS04020 at 455.729 kb on + strand, within SGL_RS04020 at 455.729 kb on + strand, within SGL_RS04020 at 455.734 kb on + strand, within SGL_RS04020 at 455.734 kb on + strand, within SGL_RS04020 at 455.742 kb on - strand, within SGL_RS04020 at 455.759 kb on - strand, within SGL_RS04020 at 455.806 kb on - strand, within SGL_RS04020 at 455.851 kb on + strand, within SGL_RS04020 at 455.948 kb on + strand, within SGL_RS04020 at 455.999 kb on + strand, within SGL_RS04020 at 456.000 kb on - strand, within SGL_RS04020 at 456.038 kb on + strand, within SGL_RS04020 at 456.273 kb on + strand, within SGL_RS04020 at 456.273 kb on + strand, within SGL_RS04020 at 456.328 kb on - strand, within SGL_RS04020 at 456.380 kb on + strand, within SGL_RS04020 at 456.398 kb on - strand, within SGL_RS04020 at 456.464 kb on + strand, within SGL_RS04020 at 456.563 kb on - strand, within SGL_RS04020 at 456.621 kb on - strand at 456.621 kb on - strand at 456.699 kb on + strand at 456.777 kb on - strand at 457.205 kb on + strand, within SGL_RS04025 at 457.345 kb on - strand, within SGL_RS04025 at 457.346 kb on - strand, within SGL_RS04025 at 457.762 kb on - strand, within SGL_RS04025
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite (N) remove 453,753 + SGL_RS04015 0.44 -0.1 453,837 - SGL_RS04015 0.51 -0.2 453,861 - SGL_RS04015 0.52 +0.2 454,128 + SGL_RS04015 0.74 +0.2 454,174 + SGL_RS04015 0.78 -0.5 454,174 + SGL_RS04015 0.78 -0.1 454,174 - SGL_RS04015 0.78 -0.4 454,182 - SGL_RS04015 0.79 -0.7 454,264 + SGL_RS04015 0.85 +0.6 454,278 - SGL_RS04015 0.86 +0.5 454,314 - SGL_RS04015 0.89 +0.5 454,840 - +2.0 454,901 - +1.5 454,903 + +1.7 455,038 + SGL_RS04020 0.16 +1.6 455,180 + SGL_RS04020 0.22 +2.4 455,187 + SGL_RS04020 0.23 +1.9 455,188 - SGL_RS04020 0.23 +1.8 455,188 - SGL_RS04020 0.23 +3.2 455,188 - SGL_RS04020 0.23 +2.1 455,308 - SGL_RS04020 0.29 +1.9 455,308 - SGL_RS04020 0.29 +1.9 455,327 + SGL_RS04020 0.30 +2.3 455,341 - SGL_RS04020 0.30 +1.9 455,371 - SGL_RS04020 0.32 +2.0 455,435 + SGL_RS04020 0.35 +2.1 455,435 + SGL_RS04020 0.35 +2.4 455,450 - SGL_RS04020 0.35 +2.1 455,510 - SGL_RS04020 0.38 +1.5 455,569 + SGL_RS04020 0.41 +2.5 455,587 + SGL_RS04020 0.42 +2.2 455,729 + SGL_RS04020 0.49 +2.8 455,729 + SGL_RS04020 0.49 +2.2 455,734 + SGL_RS04020 0.49 +2.1 455,734 + SGL_RS04020 0.49 +2.1 455,742 - SGL_RS04020 0.49 +2.4 455,759 - SGL_RS04020 0.50 +1.9 455,806 - SGL_RS04020 0.53 +1.4 455,851 + SGL_RS04020 0.55 +2.0 455,948 + SGL_RS04020 0.59 +1.5 455,999 + SGL_RS04020 0.62 +1.9 456,000 - SGL_RS04020 0.62 +1.9 456,038 + SGL_RS04020 0.64 +2.2 456,273 + SGL_RS04020 0.75 +2.2 456,273 + SGL_RS04020 0.75 +1.6 456,328 - SGL_RS04020 0.78 +2.1 456,380 + SGL_RS04020 0.80 +2.6 456,398 - SGL_RS04020 0.81 +1.7 456,464 + SGL_RS04020 0.84 +1.4 456,563 - SGL_RS04020 0.89 +1.5 456,621 - +1.8 456,621 - +1.6 456,699 + +1.8 456,777 - +1.8 457,205 + SGL_RS04025 0.17 -3.1 457,345 - SGL_RS04025 0.28 -3.9 457,346 - SGL_RS04025 0.28 -4.2 457,762 - SGL_RS04025 0.59 -3.0
Or see this region's nucleotide sequence