Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS03490

Experiment: nitrite (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS03485 and SGL_RS03490 are separated by 303 nucleotidesSGL_RS03490 and SGL_RS03495 are separated by 23 nucleotidesSGL_RS03495 and SGL_RS03500 are separated by 99 nucleotidesSGL_RS03500 and SGL_RS03505 are separated by 65 nucleotides SGL_RS03485: SGL_RS03485 - translation initiation factor IF-3, at 343,026 to 343,559 _RS03485 SGL_RS03490: SGL_RS03490 - YaaW family protein, at 343,863 to 344,720 _RS03490 SGL_RS03495: SGL_RS03495 - metal-binding protein, at 344,744 to 345,298 _RS03495 SGL_RS03500: SGL_RS03500 - tRNA-Val, at 345,398 to 345,470 _RS03500 SGL_RS03505: SGL_RS03505 - exopolysaccharide transport family protein, at 345,536 to 347,806 _RS03505 Position (kb) 343 344 345Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 343.562 kb on - strandat 344.079 kb on - strand, within SGL_RS03490at 344.095 kb on - strand, within SGL_RS03490at 344.254 kb on - strand, within SGL_RS03490at 344.273 kb on - strand, within SGL_RS03490at 344.385 kb on + strand, within SGL_RS03490at 344.597 kb on - strand, within SGL_RS03490at 344.613 kb on + strand, within SGL_RS03490at 344.684 kb on - strandat 344.842 kb on + strand, within SGL_RS03495at 344.850 kb on - strand, within SGL_RS03495at 344.913 kb on - strand, within SGL_RS03495at 344.965 kb on + strand, within SGL_RS03495at 345.178 kb on + strand, within SGL_RS03495at 345.265 kb on + strandat 345.305 kb on + strandat 345.605 kb on + strandat 345.605 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrite (N)
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343,562 - -0.3
344,079 - SGL_RS03490 0.25 -2.3
344,095 - SGL_RS03490 0.27 -4.3
344,254 - SGL_RS03490 0.46 -2.5
344,273 - SGL_RS03490 0.48 -1.2
344,385 + SGL_RS03490 0.61 -5.1
344,597 - SGL_RS03490 0.86 -4.4
344,613 + SGL_RS03490 0.87 -6.0
344,684 - -4.4
344,842 + SGL_RS03495 0.18 +0.3
344,850 - SGL_RS03495 0.19 +0.6
344,913 - SGL_RS03495 0.30 -0.0
344,965 + SGL_RS03495 0.40 -0.2
345,178 + SGL_RS03495 0.78 +0.9
345,265 + +1.1
345,305 + +0.5
345,605 + -2.0
345,605 - -1.3

Or see this region's nucleotide sequence