Experiment: nitrite (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS03090 and SGL_RS03095 are separated by 55 nucleotides SGL_RS03095 and SGL_RS03100 are separated by 224 nucleotides SGL_RS03100 and SGL_RS03105 are separated by 38 nucleotides
SGL_RS03090: SGL_RS03090 - ArsA family ATPase, at 262,177 to 263,265
_RS03090
SGL_RS03095: SGL_RS03095 - peptide-methionine (S)-S-oxide reductase MsrA, at 263,321 to 263,965
_RS03095
SGL_RS03100: SGL_RS03100 - DUF2288 domain-containing protein, at 264,190 to 264,477
_RS03100
SGL_RS03105: SGL_RS03105 - tetratricopeptide repeat protein, at 264,516 to 265,295
_RS03105
Position (kb) 263
264 Strain fitness (log2 ratio) -7
-6
-5
-4
-3
-2
-1
0
1 at 262.322 kb on - strand, within SGL_RS03090 at 262.324 kb on - strand, within SGL_RS03090 at 262.336 kb on + strand, within SGL_RS03090 at 262.384 kb on - strand, within SGL_RS03090 at 262.392 kb on + strand, within SGL_RS03090 at 262.478 kb on - strand, within SGL_RS03090 at 262.509 kb on + strand, within SGL_RS03090 at 262.576 kb on - strand, within SGL_RS03090 at 262.586 kb on - strand, within SGL_RS03090 at 262.666 kb on + strand, within SGL_RS03090 at 262.727 kb on - strand, within SGL_RS03090 at 262.781 kb on + strand, within SGL_RS03090 at 262.877 kb on + strand, within SGL_RS03090 at 263.008 kb on + strand, within SGL_RS03090 at 263.025 kb on + strand, within SGL_RS03090 at 263.025 kb on + strand, within SGL_RS03090 at 263.129 kb on + strand, within SGL_RS03090 at 263.216 kb on - strand at 263.265 kb on + strand at 263.317 kb on - strand at 263.317 kb on - strand at 263.501 kb on - strand, within SGL_RS03095 at 263.551 kb on - strand, within SGL_RS03095 at 263.685 kb on + strand, within SGL_RS03095 at 263.685 kb on + strand, within SGL_RS03095 at 263.730 kb on + strand, within SGL_RS03095 at 263.738 kb on - strand, within SGL_RS03095 at 263.763 kb on - strand, within SGL_RS03095 at 263.788 kb on - strand, within SGL_RS03095 at 263.806 kb on - strand, within SGL_RS03095 at 263.859 kb on + strand, within SGL_RS03095 at 264.026 kb on - strand at 264.293 kb on - strand, within SGL_RS03100 at 264.330 kb on + strand, within SGL_RS03100 at 264.459 kb on - strand at 264.522 kb on - strand at 264.632 kb on + strand, within SGL_RS03105 at 264.859 kb on + strand, within SGL_RS03105 at 264.918 kb on - strand, within SGL_RS03105 at 264.964 kb on + strand, within SGL_RS03105
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite (N) remove 262,322 - SGL_RS03090 0.13 -5.4 262,324 - SGL_RS03090 0.13 -3.2 262,336 + SGL_RS03090 0.15 -2.7 262,384 - SGL_RS03090 0.19 -4.3 262,392 + SGL_RS03090 0.20 -4.0 262,478 - SGL_RS03090 0.28 -2.4 262,509 + SGL_RS03090 0.30 -5.0 262,576 - SGL_RS03090 0.37 -4.4 262,586 - SGL_RS03090 0.38 -3.9 262,666 + SGL_RS03090 0.45 -5.8 262,727 - SGL_RS03090 0.51 -4.7 262,781 + SGL_RS03090 0.55 -1.9 262,877 + SGL_RS03090 0.64 -4.1 263,008 + SGL_RS03090 0.76 -4.9 263,025 + SGL_RS03090 0.78 -5.1 263,025 + SGL_RS03090 0.78 -5.0 263,129 + SGL_RS03090 0.87 -3.1 263,216 - -6.8 263,265 + -0.1 263,317 - +0.0 263,317 - +0.3 263,501 - SGL_RS03095 0.28 -0.5 263,551 - SGL_RS03095 0.36 -0.1 263,685 + SGL_RS03095 0.56 +0.4 263,685 + SGL_RS03095 0.56 -0.5 263,730 + SGL_RS03095 0.63 -0.3 263,738 - SGL_RS03095 0.65 +0.1 263,763 - SGL_RS03095 0.69 -0.7 263,788 - SGL_RS03095 0.72 -0.2 263,806 - SGL_RS03095 0.75 +0.2 263,859 + SGL_RS03095 0.83 -0.1 264,026 - +0.2 264,293 - SGL_RS03100 0.36 +1.0 264,330 + SGL_RS03100 0.49 +0.1 264,459 - -0.0 264,522 - -0.0 264,632 + SGL_RS03105 0.15 +1.6 264,859 + SGL_RS03105 0.44 +1.7 264,918 - SGL_RS03105 0.52 +1.7 264,964 + SGL_RS03105 0.57 +1.5
Or see this region's nucleotide sequence