Experiment: nitrite (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS03070 and SGL_RS03075 are separated by 57 nucleotides SGL_RS03075 and SGL_RS03080 are separated by 191 nucleotides SGL_RS03080 and SGL_RS19410 are separated by 20 nucleotides SGL_RS19410 and SGL_RS03085 are separated by 60 nucleotides SGL_RS03085 and SGL_RS03090 are separated by 116 nucleotides
SGL_RS03070: SGL_RS03070 - tRNA-Ser, at 259,560 to 259,644
_RS03070
SGL_RS03075: SGL_RS03075 - shikimate kinase, at 259,702 to 260,271
_RS03075
SGL_RS03080: SGL_RS03080 - transaldolase, at 260,463 to 261,638
_RS03080
SGL_RS19410: SGL_RS19410 - hypothetical protein, at 261,659 to 261,802
_RS19410
SGL_RS03085: SGL_RS03085 - DUF2862 domain-containing protein, at 261,863 to 262,060
_RS03085
SGL_RS03090: SGL_RS03090 - ArsA family ATPase, at 262,177 to 263,265
_RS03090
Position (kb) 260
261
262 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3
4
5 at 259.498 kb on - strand at 259.692 kb on - strand at 259.727 kb on + strand at 259.727 kb on + strand at 259.728 kb on - strand at 260.279 kb on + strand at 260.510 kb on + strand at 260.641 kb on - strand, within SGL_RS03080 at 260.691 kb on + strand, within SGL_RS03080 at 260.699 kb on - strand, within SGL_RS03080 at 261.192 kb on - strand, within SGL_RS03080 at 261.265 kb on + strand, within SGL_RS03080 at 261.276 kb on + strand, within SGL_RS03080 at 261.278 kb on - strand, within SGL_RS03080 at 261.310 kb on - strand, within SGL_RS03080 at 261.310 kb on - strand, within SGL_RS03080 at 261.395 kb on - strand, within SGL_RS03080 at 261.447 kb on - strand, within SGL_RS03080 at 261.518 kb on + strand, within SGL_RS03080 at 261.526 kb on - strand at 261.537 kb on - strand at 261.703 kb on - strand, within SGL_RS19410 at 261.743 kb on + strand, within SGL_RS19410 at 261.748 kb on + strand, within SGL_RS19410 at 261.876 kb on - strand at 262.005 kb on + strand, within SGL_RS03085 at 262.013 kb on - strand, within SGL_RS03085 at 262.067 kb on + strand at 262.219 kb on - strand at 262.269 kb on + strand at 262.271 kb on + strand at 262.272 kb on - strand at 262.282 kb on - strand at 262.315 kb on + strand, within SGL_RS03090 at 262.322 kb on - strand, within SGL_RS03090 at 262.324 kb on - strand, within SGL_RS03090 at 262.336 kb on + strand, within SGL_RS03090 at 262.384 kb on - strand, within SGL_RS03090 at 262.392 kb on + strand, within SGL_RS03090 at 262.478 kb on - strand, within SGL_RS03090 at 262.509 kb on + strand, within SGL_RS03090 at 262.576 kb on - strand, within SGL_RS03090 at 262.586 kb on - strand, within SGL_RS03090
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite (N) remove 259,498 - -0.2 259,692 - +0.1 259,727 + +5.0 259,727 + +4.7 259,728 - +0.4 260,279 + +0.5 260,510 + +0.1 260,641 - SGL_RS03080 0.15 +0.3 260,691 + SGL_RS03080 0.19 +0.0 260,699 - SGL_RS03080 0.20 -2.2 261,192 - SGL_RS03080 0.62 +0.1 261,265 + SGL_RS03080 0.68 -0.0 261,276 + SGL_RS03080 0.69 +0.7 261,278 - SGL_RS03080 0.69 +0.4 261,310 - SGL_RS03080 0.72 +0.2 261,310 - SGL_RS03080 0.72 -0.0 261,395 - SGL_RS03080 0.79 -0.4 261,447 - SGL_RS03080 0.84 +0.1 261,518 + SGL_RS03080 0.90 -0.2 261,526 - -0.5 261,537 - +0.1 261,703 - SGL_RS19410 0.31 +0.5 261,743 + SGL_RS19410 0.58 -0.5 261,748 + SGL_RS19410 0.62 +0.4 261,876 - -5.2 262,005 + SGL_RS03085 0.72 -5.9 262,013 - SGL_RS03085 0.76 -1.6 262,067 + -0.8 262,219 - -2.1 262,269 + -5.3 262,271 + -6.1 262,272 - -3.0 262,282 - -4.5 262,315 + SGL_RS03090 0.13 -5.3 262,322 - SGL_RS03090 0.13 -5.4 262,324 - SGL_RS03090 0.13 -3.2 262,336 + SGL_RS03090 0.15 -2.7 262,384 - SGL_RS03090 0.19 -4.3 262,392 + SGL_RS03090 0.20 -4.0 262,478 - SGL_RS03090 0.28 -2.4 262,509 + SGL_RS03090 0.30 -5.0 262,576 - SGL_RS03090 0.37 -4.4 262,586 - SGL_RS03090 0.38 -3.9
Or see this region's nucleotide sequence