Experiment: nitrite (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS19550 and SGL_RS02920 are separated by 24 nucleotides SGL_RS02920 and SGL_RS02925 are separated by 43 nucleotides SGL_RS02925 and SGL_RS02930 are separated by 53 nucleotides
SGL_RS19550: SGL_RS19550 - hypothetical protein, at 226,928 to 227,098
_RS19550
SGL_RS02920: SGL_RS02920 - DUF2092 domain-containing protein, at 227,123 to 227,899
_RS02920
SGL_RS02925: SGL_RS02925 - DUF6515 family protein, at 227,943 to 228,812
_RS02925
SGL_RS02930: SGL_RS02930 - SulP family inorganic anion transporter, at 228,866 to 230,566
_RS02930
Position (kb) 227
228
229 Strain fitness (log2 ratio) -1
0
1 at 227.001 kb on - strand, within SGL_RS19550 at 227.038 kb on + strand, within SGL_RS19550 at 227.256 kb on + strand, within SGL_RS02920 at 227.583 kb on - strand, within SGL_RS02920 at 228.038 kb on + strand, within SGL_RS02925 at 228.046 kb on - strand, within SGL_RS02925 at 228.046 kb on - strand, within SGL_RS02925 at 228.098 kb on + strand, within SGL_RS02925 at 228.109 kb on + strand, within SGL_RS02925 at 228.156 kb on - strand, within SGL_RS02925 at 228.165 kb on - strand, within SGL_RS02925 at 228.181 kb on + strand, within SGL_RS02925 at 228.189 kb on - strand, within SGL_RS02925 at 228.194 kb on - strand, within SGL_RS02925 at 228.488 kb on + strand, within SGL_RS02925 at 228.520 kb on - strand, within SGL_RS02925 at 228.524 kb on + strand, within SGL_RS02925 at 228.532 kb on - strand, within SGL_RS02925 at 228.630 kb on + strand, within SGL_RS02925 at 228.643 kb on - strand, within SGL_RS02925 at 228.762 kb on + strand at 228.943 kb on + strand at 228.976 kb on + strand at 228.985 kb on - strand at 229.029 kb on + strand at 229.221 kb on - strand, within SGL_RS02930 at 229.659 kb on - strand, within SGL_RS02930 at 229.760 kb on + strand, within SGL_RS02930
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite (N) remove 227,001 - SGL_RS19550 0.43 +0.7 227,038 + SGL_RS19550 0.64 +0.3 227,256 + SGL_RS02920 0.17 +0.1 227,583 - SGL_RS02920 0.59 +1.5 228,038 + SGL_RS02925 0.11 -0.0 228,046 - SGL_RS02925 0.12 +0.2 228,046 - SGL_RS02925 0.12 -0.5 228,098 + SGL_RS02925 0.18 +0.6 228,109 + SGL_RS02925 0.19 -0.2 228,156 - SGL_RS02925 0.24 +0.4 228,165 - SGL_RS02925 0.26 +0.1 228,181 + SGL_RS02925 0.27 +0.3 228,189 - SGL_RS02925 0.28 +0.2 228,194 - SGL_RS02925 0.29 -1.5 228,488 + SGL_RS02925 0.63 -0.1 228,520 - SGL_RS02925 0.66 +0.3 228,524 + SGL_RS02925 0.67 -0.2 228,532 - SGL_RS02925 0.68 -1.1 228,630 + SGL_RS02925 0.79 +0.7 228,643 - SGL_RS02925 0.80 +0.8 228,762 + -0.7 228,943 + +0.8 228,976 + -0.1 228,985 - +0.0 229,029 + -0.2 229,221 - SGL_RS02930 0.21 +0.2 229,659 - SGL_RS02930 0.47 -0.1 229,760 + SGL_RS02930 0.53 -0.3
Or see this region's nucleotide sequence