Experiment: nitrite (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS02910 and SGL_RS02915 are separated by 90 nucleotides SGL_RS02915 and SGL_RS19550 are separated by 564 nucleotides SGL_RS19550 and SGL_RS02920 are separated by 24 nucleotides
SGL_RS02910: SGL_RS02910 - linear amide C-N hydrolase, at 223,742 to 224,806
_RS02910
SGL_RS02915: SGL_RS02915 - TM0106 family RecB-like putative nuclease, at 224,897 to 226,363
_RS02915
SGL_RS19550: SGL_RS19550 - hypothetical protein, at 226,928 to 227,098
_RS19550
SGL_RS02920: SGL_RS02920 - DUF2092 domain-containing protein, at 227,123 to 227,899
_RS02920
Position (kb) 224
225
226
227 Strain fitness (log2 ratio) -1
0
1
2
3
4
5
6 at 223.986 kb on + strand, within SGL_RS02910 at 223.989 kb on - strand, within SGL_RS02910 at 223.994 kb on - strand, within SGL_RS02910 at 224.038 kb on - strand, within SGL_RS02910 at 224.155 kb on - strand, within SGL_RS02910 at 224.166 kb on - strand, within SGL_RS02910 at 224.314 kb on + strand, within SGL_RS02910 at 224.337 kb on + strand, within SGL_RS02910 at 224.486 kb on - strand, within SGL_RS02910 at 224.706 kb on - strand at 225.058 kb on - strand, within SGL_RS02915 at 225.125 kb on - strand, within SGL_RS02915 at 225.454 kb on - strand, within SGL_RS02915 at 225.642 kb on - strand, within SGL_RS02915 at 225.716 kb on - strand, within SGL_RS02915 at 225.724 kb on - strand, within SGL_RS02915 at 225.771 kb on + strand, within SGL_RS02915 at 225.893 kb on - strand, within SGL_RS02915 at 225.898 kb on - strand, within SGL_RS02915 at 225.976 kb on + strand, within SGL_RS02915 at 226.196 kb on - strand, within SGL_RS02915 at 226.282 kb on + strand at 226.376 kb on + strand at 226.406 kb on + strand at 226.533 kb on + strand at 226.619 kb on + strand at 226.716 kb on + strand at 226.738 kb on + strand at 226.863 kb on - strand at 226.918 kb on - strand at 227.001 kb on - strand, within SGL_RS19550 at 227.038 kb on + strand, within SGL_RS19550 at 227.256 kb on + strand, within SGL_RS02920
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite (N) remove 223,986 + SGL_RS02910 0.23 +0.2 223,989 - SGL_RS02910 0.23 +0.1 223,994 - SGL_RS02910 0.24 -0.7 224,038 - SGL_RS02910 0.28 -0.3 224,155 - SGL_RS02910 0.39 +0.3 224,166 - SGL_RS02910 0.40 +0.0 224,314 + SGL_RS02910 0.54 +0.1 224,337 + SGL_RS02910 0.56 +0.1 224,486 - SGL_RS02910 0.70 -0.5 224,706 - -0.0 225,058 - SGL_RS02915 0.11 +0.7 225,125 - SGL_RS02915 0.16 +0.5 225,454 - SGL_RS02915 0.38 +0.9 225,642 - SGL_RS02915 0.51 +1.2 225,716 - SGL_RS02915 0.56 +1.3 225,724 - SGL_RS02915 0.56 +1.6 225,771 + SGL_RS02915 0.60 +0.7 225,893 - SGL_RS02915 0.68 +0.8 225,898 - SGL_RS02915 0.68 +0.2 225,976 + SGL_RS02915 0.74 +5.8 226,196 - SGL_RS02915 0.89 +2.1 226,282 + +1.3 226,376 + +2.0 226,406 + +0.7 226,533 + -0.0 226,619 + -0.3 226,716 + -0.6 226,738 + -0.2 226,863 - +0.4 226,918 - -0.1 227,001 - SGL_RS19550 0.43 +0.7 227,038 + SGL_RS19550 0.64 +0.3 227,256 + SGL_RS02920 0.17 +0.1
Or see this region's nucleotide sequence