Experiment: nitrite (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS02480 and SGL_RS02485 are separated by 1 nucleotides SGL_RS02485 and SGL_RS20105 are separated by 63 nucleotides SGL_RS20105 and SGL_RS02490 overlap by 7 nucleotides SGL_RS02490 and SGL_RS02495 are separated by 49 nucleotides SGL_RS02495 and SGL_RS02500 are separated by 115 nucleotides
SGL_RS02480: SGL_RS02480 - translation initiation factor IF-2, at 134,437 to 137,442
_RS02480
SGL_RS02485: SGL_RS02485 - glutathione S-transferase family protein, at 137,444 to 138,112
_RS02485
SGL_RS20105: SGL_RS20105 - hypothetical protein, at 138,176 to 138,301
_RS20105
SGL_RS02490: SGL_RS02490 - glycogen debranching protein GlgX, at 138,295 to 140,535
_RS02490
SGL_RS02495: SGL_RS02495 - hypothetical protein, at 140,585 to 141,007
_RS02495
SGL_RS02500: SGL_RS02500 - transposase, at 141,123 to 141,428
_RS02500
Position (kb) 138
139
140
141 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 137.476 kb on - strand at 137.503 kb on - strand at 137.801 kb on + strand, within SGL_RS02485 at 138.142 kb on + strand at 138.218 kb on + strand, within SGL_RS20105 at 138.370 kb on - strand at 138.378 kb on - strand at 138.429 kb on + strand at 138.546 kb on + strand, within SGL_RS02490 at 138.546 kb on + strand, within SGL_RS02490 at 138.554 kb on - strand, within SGL_RS02490 at 138.605 kb on - strand, within SGL_RS02490 at 138.614 kb on - strand, within SGL_RS02490 at 138.711 kb on - strand, within SGL_RS02490 at 138.711 kb on - strand, within SGL_RS02490 at 138.716 kb on - strand, within SGL_RS02490 at 138.733 kb on + strand, within SGL_RS02490 at 138.741 kb on - strand, within SGL_RS02490 at 138.741 kb on - strand, within SGL_RS02490 at 138.741 kb on - strand, within SGL_RS02490 at 138.938 kb on - strand, within SGL_RS02490 at 138.949 kb on - strand, within SGL_RS02490 at 139.022 kb on - strand, within SGL_RS02490 at 139.023 kb on - strand, within SGL_RS02490 at 139.069 kb on + strand, within SGL_RS02490 at 139.116 kb on + strand, within SGL_RS02490 at 139.122 kb on - strand, within SGL_RS02490 at 139.134 kb on + strand, within SGL_RS02490 at 139.179 kb on - strand, within SGL_RS02490 at 139.179 kb on - strand, within SGL_RS02490 at 139.181 kb on + strand, within SGL_RS02490 at 139.268 kb on - strand, within SGL_RS02490 at 139.450 kb on + strand, within SGL_RS02490 at 139.453 kb on - strand, within SGL_RS02490 at 139.483 kb on + strand, within SGL_RS02490 at 139.488 kb on - strand, within SGL_RS02490 at 139.493 kb on - strand, within SGL_RS02490 at 139.607 kb on - strand, within SGL_RS02490 at 139.688 kb on + strand, within SGL_RS02490 at 139.696 kb on - strand, within SGL_RS02490 at 139.728 kb on - strand, within SGL_RS02490 at 140.024 kb on + strand, within SGL_RS02490 at 140.178 kb on + strand, within SGL_RS02490 at 140.234 kb on + strand, within SGL_RS02490 at 140.250 kb on - strand, within SGL_RS02490 at 140.258 kb on + strand, within SGL_RS02490 at 140.277 kb on + strand, within SGL_RS02490 at 140.277 kb on + strand, within SGL_RS02490 at 140.277 kb on + strand, within SGL_RS02490 at 140.285 kb on - strand, within SGL_RS02490 at 140.285 kb on - strand, within SGL_RS02490 at 140.295 kb on - strand, within SGL_RS02490 at 140.647 kb on + strand, within SGL_RS02495 at 140.739 kb on - strand, within SGL_RS02495 at 141.359 kb on - strand, within SGL_RS02500 at 141.365 kb on - strand, within SGL_RS02500 at 141.377 kb on + strand, within SGL_RS02500
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite (N) remove 137,476 - +1.4 137,503 - +0.9 137,801 + SGL_RS02485 0.53 +1.2 138,142 + +0.1 138,218 + SGL_RS20105 0.33 -0.8 138,370 - -1.2 138,378 - -2.9 138,429 + -2.4 138,546 + SGL_RS02490 0.11 -2.3 138,546 + SGL_RS02490 0.11 -1.8 138,554 - SGL_RS02490 0.12 -2.5 138,605 - SGL_RS02490 0.14 -1.3 138,614 - SGL_RS02490 0.14 -2.5 138,711 - SGL_RS02490 0.19 -1.6 138,711 - SGL_RS02490 0.19 -2.6 138,716 - SGL_RS02490 0.19 -1.4 138,733 + SGL_RS02490 0.20 -1.0 138,741 - SGL_RS02490 0.20 -2.1 138,741 - SGL_RS02490 0.20 -3.2 138,741 - SGL_RS02490 0.20 -2.7 138,938 - SGL_RS02490 0.29 -1.9 138,949 - SGL_RS02490 0.29 -2.4 139,022 - SGL_RS02490 0.32 -1.6 139,023 - SGL_RS02490 0.32 -2.6 139,069 + SGL_RS02490 0.35 -2.6 139,116 + SGL_RS02490 0.37 -3.1 139,122 - SGL_RS02490 0.37 -1.0 139,134 + SGL_RS02490 0.37 -1.4 139,179 - SGL_RS02490 0.39 -0.9 139,179 - SGL_RS02490 0.39 -2.4 139,181 + SGL_RS02490 0.40 -2.2 139,268 - SGL_RS02490 0.43 -1.7 139,450 + SGL_RS02490 0.52 -1.6 139,453 - SGL_RS02490 0.52 -0.7 139,483 + SGL_RS02490 0.53 -1.1 139,488 - SGL_RS02490 0.53 -1.1 139,493 - SGL_RS02490 0.53 -3.6 139,607 - SGL_RS02490 0.59 -1.7 139,688 + SGL_RS02490 0.62 -0.1 139,696 - SGL_RS02490 0.63 -4.0 139,728 - SGL_RS02490 0.64 -2.7 140,024 + SGL_RS02490 0.77 -1.3 140,178 + SGL_RS02490 0.84 -0.9 140,234 + SGL_RS02490 0.87 -1.6 140,250 - SGL_RS02490 0.87 -2.1 140,258 + SGL_RS02490 0.88 -1.0 140,277 + SGL_RS02490 0.88 -1.0 140,277 + SGL_RS02490 0.88 -0.3 140,277 + SGL_RS02490 0.88 -2.1 140,285 - SGL_RS02490 0.89 -1.7 140,285 - SGL_RS02490 0.89 -1.5 140,295 - SGL_RS02490 0.89 -1.8 140,647 + SGL_RS02495 0.15 +1.4 140,739 - SGL_RS02495 0.36 -0.2 141,359 - SGL_RS02500 0.77 +0.1 141,365 - SGL_RS02500 0.79 +0.4 141,377 + SGL_RS02500 0.83 +0.3
Or see this region's nucleotide sequence