Experiment: nitrite (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS02460 and SGL_RS02465 are separated by 161 nucleotides SGL_RS02465 and SGL_RS02470 are separated by 75 nucleotides SGL_RS02470 and SGL_RS02475 are separated by 63 nucleotides SGL_RS02475 and SGL_RS02480 are separated by 259 nucleotides
SGL_RS02460: SGL_RS02460 - phosphate signaling complex protein PhoU, at 131,116 to 131,790
_RS02460
SGL_RS02465: SGL_RS02465 - ribosome maturation factor RimP, at 131,952 to 132,407
_RS02465
SGL_RS02470: SGL_RS02470 - transcription termination factor NusA, at 132,483 to 133,859
_RS02470
SGL_RS02475: SGL_RS02475 - YlxR family protein, at 133,923 to 134,177
_RS02475
SGL_RS02480: SGL_RS02480 - translation initiation factor IF-2, at 134,437 to 137,442
_RS02480
Position (kb) 132
133
134 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 131.639 kb on + strand, within SGL_RS02460 at 131.645 kb on - strand, within SGL_RS02460 at 131.646 kb on - strand, within SGL_RS02460 at 131.785 kb on + strand at 131.844 kb on + strand at 132.380 kb on + strand at 132.382 kb on + strand at 133.662 kb on + strand, within SGL_RS02470 at 133.667 kb on + strand, within SGL_RS02470 at 133.667 kb on + strand, within SGL_RS02470 at 133.667 kb on + strand, within SGL_RS02470 at 133.675 kb on - strand, within SGL_RS02470 at 133.700 kb on - strand, within SGL_RS02470 at 133.768 kb on + strand at 133.832 kb on + strand at 133.866 kb on - strand at 133.893 kb on + strand at 134.002 kb on + strand, within SGL_RS02475 at 134.111 kb on + strand, within SGL_RS02475
Per-strain Table
Position Strand Gene LocusTag Fraction nitrite (N) remove 131,639 + SGL_RS02460 0.77 -3.0 131,645 - SGL_RS02460 0.78 -3.5 131,646 - SGL_RS02460 0.79 -3.8 131,785 + -0.4 131,844 + -4.3 132,380 + -1.4 132,382 + -1.9 133,662 + SGL_RS02470 0.86 -5.1 133,667 + SGL_RS02470 0.86 -0.0 133,667 + SGL_RS02470 0.86 -0.2 133,667 + SGL_RS02470 0.86 -0.1 133,675 - SGL_RS02470 0.87 -1.1 133,700 - SGL_RS02470 0.88 -2.6 133,768 + -0.2 133,832 + +0.2 133,866 - -1.1 133,893 + -1.0 134,002 + SGL_RS02475 0.31 +0.4 134,111 + SGL_RS02475 0.74 +0.5
Or see this region's nucleotide sequence