Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS08990

Experiment: control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS08980 and SGL_RS08985 are separated by 73 nucleotidesSGL_RS08985 and SGL_RS08990 are separated by 90 nucleotidesSGL_RS08990 and SGL_RS08995 are separated by 216 nucleotidesSGL_RS08995 and SGL_RS09000 are separated by 86 nucleotides SGL_RS08980: SGL_RS08980 - UDP-glucose 4-epimerase GalE, at 1,521,210 to 1,522,226 _RS08980 SGL_RS08985: SGL_RS08985 - hypothetical protein, at 1,522,300 to 1,522,899 _RS08985 SGL_RS08990: SGL_RS08990 - DUF2605 domain-containing protein, at 1,522,990 to 1,523,310 _RS08990 SGL_RS08995: SGL_RS08995 - NblA/ycf18 family protein, at 1,523,527 to 1,523,709 _RS08995 SGL_RS09000: SGL_RS09000 - NblA/ycf18 family protein, at 1,523,796 to 1,523,984 _RS09000 Position (kb) 1522 1523 1524Strain fitness (log2 ratio) -1 0 1at 1522.388 kb on - strand, within SGL_RS08985at 1522.393 kb on - strand, within SGL_RS08985at 1522.395 kb on + strand, within SGL_RS08985at 1522.489 kb on - strand, within SGL_RS08985at 1522.519 kb on + strand, within SGL_RS08985at 1522.547 kb on - strand, within SGL_RS08985at 1522.611 kb on + strand, within SGL_RS08985at 1522.651 kb on + strand, within SGL_RS08985at 1522.659 kb on - strand, within SGL_RS08985at 1522.659 kb on - strand, within SGL_RS08985at 1522.686 kb on + strand, within SGL_RS08985at 1522.703 kb on + strand, within SGL_RS08985at 1522.750 kb on - strand, within SGL_RS08985at 1522.765 kb on + strand, within SGL_RS08985at 1522.781 kb on - strand, within SGL_RS08985at 1522.903 kb on + strandat 1523.041 kb on - strand, within SGL_RS08990at 1523.074 kb on - strand, within SGL_RS08990at 1523.147 kb on + strand, within SGL_RS08990at 1523.155 kb on - strand, within SGL_RS08990at 1523.272 kb on - strand, within SGL_RS08990at 1523.349 kb on + strandat 1523.378 kb on + strandat 1523.492 kb on - strandat 1523.515 kb on + strandat 1523.522 kb on - strandat 1523.634 kb on - strand, within SGL_RS08995at 1523.685 kb on + strand, within SGL_RS08995at 1523.685 kb on + strand, within SGL_RS08995at 1523.693 kb on - strandat 1523.806 kb on + strandat 1523.897 kb on + strand, within SGL_RS09000at 1524.101 kb on + strandat 1524.302 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction control
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1,522,388 - SGL_RS08985 0.15 -0.5
1,522,393 - SGL_RS08985 0.15 -0.1
1,522,395 + SGL_RS08985 0.16 -0.2
1,522,489 - SGL_RS08985 0.32 +0.1
1,522,519 + SGL_RS08985 0.36 -0.4
1,522,547 - SGL_RS08985 0.41 +0.1
1,522,611 + SGL_RS08985 0.52 +0.0
1,522,651 + SGL_RS08985 0.58 +0.8
1,522,659 - SGL_RS08985 0.60 +0.3
1,522,659 - SGL_RS08985 0.60 +0.4
1,522,686 + SGL_RS08985 0.64 +0.1
1,522,703 + SGL_RS08985 0.67 -0.3
1,522,750 - SGL_RS08985 0.75 +0.1
1,522,765 + SGL_RS08985 0.78 +0.1
1,522,781 - SGL_RS08985 0.80 -0.2
1,522,903 + +0.2
1,523,041 - SGL_RS08990 0.16 +0.1
1,523,074 - SGL_RS08990 0.26 +0.2
1,523,147 + SGL_RS08990 0.49 +0.9
1,523,155 - SGL_RS08990 0.51 -0.1
1,523,272 - SGL_RS08990 0.88 +0.7
1,523,349 + -0.2
1,523,378 + +0.7
1,523,492 - +0.0
1,523,515 + +0.2
1,523,522 - +0.1
1,523,634 - SGL_RS08995 0.58 -0.2
1,523,685 + SGL_RS08995 0.86 +0.0
1,523,685 + SGL_RS08995 0.86 -0.2
1,523,693 - -0.2
1,523,806 + +0.1
1,523,897 + SGL_RS09000 0.53 -0.1
1,524,101 + +0.0
1,524,302 + +0.2

Or see this region's nucleotide sequence