Experiment: high light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS18285 and SGL_RS18290 are separated by 74 nucleotides SGL_RS18290 and SGL_RS18295 are separated by 142 nucleotides SGL_RS18295 and SGL_RS18300 are separated by 58 nucleotides
SGL_RS18285: SGL_RS18285 - ABC transporter permease, at 3,551,159 to 3,552,382
_RS18285
SGL_RS18290: SGL_RS18290 - transcriptional repressor, at 3,552,457 to 3,552,954
_RS18290
SGL_RS18295: SGL_RS18295 - creatininase family protein, at 3,553,097 to 3,553,918
_RS18295
SGL_RS18300: SGL_RS18300 - bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase, at 3,553,977 to 3,555,512
_RS18300
Position (kb)
3553
3554 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3552.131 kb on + strand, within SGL_RS18285 at 3552.167 kb on + strand, within SGL_RS18285 at 3552.191 kb on - strand, within SGL_RS18285 at 3552.366 kb on - strand at 3552.370 kb on + strand at 3552.370 kb on + strand at 3553.156 kb on + strand at 3553.351 kb on + strand, within SGL_RS18295 at 3553.366 kb on - strand, within SGL_RS18295 at 3553.392 kb on - strand, within SGL_RS18295 at 3553.489 kb on - strand, within SGL_RS18295 at 3553.598 kb on - strand, within SGL_RS18295 at 3553.598 kb on - strand, within SGL_RS18295 at 3553.656 kb on + strand, within SGL_RS18295 at 3554.066 kb on + strand at 3554.074 kb on - strand at 3554.364 kb on + strand, within SGL_RS18300 at 3554.414 kb on - strand, within SGL_RS18300 at 3554.438 kb on + strand, within SGL_RS18300 at 3554.511 kb on - strand, within SGL_RS18300 at 3554.648 kb on + strand, within SGL_RS18300 at 3554.686 kb on - strand, within SGL_RS18300 at 3554.706 kb on + strand, within SGL_RS18300 at 3554.775 kb on - strand, within SGL_RS18300
Per-strain Table
Position Strand Gene LocusTag Fraction high light; bubbling remove 3,552,131 + SGL_RS18285 0.79 -2.6 3,552,167 + SGL_RS18285 0.82 -4.0 3,552,191 - SGL_RS18285 0.84 -3.3 3,552,366 - -2.7 3,552,370 + -1.3 3,552,370 + -0.6 3,553,156 + -0.2 3,553,351 + SGL_RS18295 0.31 +0.1 3,553,366 - SGL_RS18295 0.33 -0.8 3,553,392 - SGL_RS18295 0.36 -0.2 3,553,489 - SGL_RS18295 0.48 -0.4 3,553,598 - SGL_RS18295 0.61 -0.4 3,553,598 - SGL_RS18295 0.61 -0.5 3,553,656 + SGL_RS18295 0.68 +0.2 3,554,066 + -2.1 3,554,074 - -1.8 3,554,364 + SGL_RS18300 0.25 -1.8 3,554,414 - SGL_RS18300 0.28 -3.3 3,554,438 + SGL_RS18300 0.30 -2.3 3,554,511 - SGL_RS18300 0.35 -2.3 3,554,648 + SGL_RS18300 0.44 -3.5 3,554,686 - SGL_RS18300 0.46 -4.1 3,554,706 + SGL_RS18300 0.47 -2.3 3,554,775 - SGL_RS18300 0.52 -2.8
Or see this region's nucleotide sequence