Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS17675

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS17665 and SGL_RS17670 are separated by 124 nucleotidesSGL_RS17670 and SGL_RS17675 are separated by 124 nucleotidesSGL_RS17675 and SGL_RS17680 are separated by 192 nucleotides SGL_RS17665: SGL_RS17665 - DUF4278 domain-containing protein, at 3,418,971 to 3,419,420 _RS17665 SGL_RS17670: SGL_RS17670 - tetratricopeptide repeat protein, at 3,419,545 to 3,420,291 _RS17670 SGL_RS17675: SGL_RS17675 - phosphopyruvate hydratase, at 3,420,416 to 3,421,714 _RS17675 SGL_RS17680: SGL_RS17680 - hypothetical protein, at 3,421,907 to 3,422,482 _RS17680 Position (kb) 3420 3421 3422Strain fitness (log2 ratio) -2 -1 0 1at 3419.632 kb on + strand, within SGL_RS17670at 3419.668 kb on + strand, within SGL_RS17670at 3419.686 kb on - strand, within SGL_RS17670at 3419.723 kb on - strand, within SGL_RS17670at 3419.728 kb on - strand, within SGL_RS17670at 3419.747 kb on + strand, within SGL_RS17670at 3419.755 kb on - strand, within SGL_RS17670at 3419.824 kb on - strand, within SGL_RS17670at 3419.914 kb on - strand, within SGL_RS17670at 3419.919 kb on - strand, within SGL_RS17670at 3419.987 kb on - strand, within SGL_RS17670at 3419.989 kb on + strand, within SGL_RS17670at 3419.996 kb on + strand, within SGL_RS17670at 3420.014 kb on - strand, within SGL_RS17670at 3420.022 kb on - strand, within SGL_RS17670at 3420.038 kb on - strand, within SGL_RS17670at 3420.087 kb on + strand, within SGL_RS17670at 3420.132 kb on + strand, within SGL_RS17670at 3420.165 kb on + strand, within SGL_RS17670at 3420.173 kb on - strand, within SGL_RS17670at 3420.186 kb on - strand, within SGL_RS17670at 3420.186 kb on - strand, within SGL_RS17670at 3420.227 kb on - strandat 3420.823 kb on - strand, within SGL_RS17675at 3421.766 kb on + strandat 3421.831 kb on + strandat 3422.237 kb on - strand, within SGL_RS17680

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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3,419,632 + SGL_RS17670 0.12 -0.4
3,419,668 + SGL_RS17670 0.16 -0.8
3,419,686 - SGL_RS17670 0.19 +1.0
3,419,723 - SGL_RS17670 0.24 +0.1
3,419,728 - SGL_RS17670 0.24 +0.1
3,419,747 + SGL_RS17670 0.27 -1.0
3,419,755 - SGL_RS17670 0.28 +0.2
3,419,824 - SGL_RS17670 0.37 +0.2
3,419,914 - SGL_RS17670 0.49 -0.5
3,419,919 - SGL_RS17670 0.50 +1.2
3,419,987 - SGL_RS17670 0.59 +0.4
3,419,989 + SGL_RS17670 0.59 +0.4
3,419,996 + SGL_RS17670 0.60 -0.8
3,420,014 - SGL_RS17670 0.63 -0.5
3,420,022 - SGL_RS17670 0.64 +0.9
3,420,038 - SGL_RS17670 0.66 +0.7
3,420,087 + SGL_RS17670 0.73 +0.2
3,420,132 + SGL_RS17670 0.79 -0.5
3,420,165 + SGL_RS17670 0.83 +0.4
3,420,173 - SGL_RS17670 0.84 +0.3
3,420,186 - SGL_RS17670 0.86 +0.6
3,420,186 - SGL_RS17670 0.86 -0.2
3,420,227 - -0.8
3,420,823 - SGL_RS17675 0.31 -2.1
3,421,766 + +0.1
3,421,831 + -0.2
3,422,237 - SGL_RS17680 0.57 +0.6

Or see this region's nucleotide sequence