Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS17045

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS17040 and SGL_RS17045 are separated by 198 nucleotidesSGL_RS17045 and SGL_RS17050 are separated by 254 nucleotides SGL_RS17040: SGL_RS17040 - M1 family metallopeptidase, at 3,275,314 to 3,277,923 _RS17040 SGL_RS17045: SGL_RS17045 - type I glyceraldehyde-3-phosphate dehydrogenase, at 3,278,122 to 3,279,135 _RS17045 SGL_RS17050: SGL_RS17050 - UDP-N-acetylmuramate--L-alanine ligase, at 3,279,390 to 3,280,907 _RS17050 Position (kb) 3278 3279 3280Strain fitness (log2 ratio) -3 -2 -1 0 1at 3277.141 kb on + strand, within SGL_RS17040at 3277.507 kb on + strand, within SGL_RS17040at 3277.626 kb on - strand, within SGL_RS17040at 3277.971 kb on - strandat 3278.063 kb on - strandat 3279.163 kb on - strandat 3279.263 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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3,277,141 + SGL_RS17040 0.70 -0.7
3,277,507 + SGL_RS17040 0.84 -0.9
3,277,626 - SGL_RS17040 0.89 +1.4
3,277,971 - -0.9
3,278,063 - -1.6
3,279,163 - -1.9
3,279,263 - -3.7

Or see this region's nucleotide sequence