Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS16415

Experiment: high light; bubbling

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS16405 and SGL_RS16410 are separated by 21 nucleotidesSGL_RS16410 and SGL_RS16415 are separated by 17 nucleotidesSGL_RS16415 and SGL_RS16420 are separated by 73 nucleotides SGL_RS16405: SGL_RS16405 - dihydroorotate dehydrogenase-like protein, at 3,126,311 to 3,127,342 _RS16405 SGL_RS16410: SGL_RS16410 - DUF29 domain-containing protein, at 3,127,364 to 3,127,846 _RS16410 SGL_RS16415: SGL_RS16415 - DUF29 domain-containing protein, at 3,127,864 to 3,128,313 _RS16415 SGL_RS16420: SGL_RS16420 - pyruvate:ferredoxin (flavodoxin) oxidoreductase, at 3,128,387 to 3,131,986 _RS16420 Position (kb) 3127 3128 3129Strain fitness (log2 ratio) -1 0 1at 3126.957 kb on + strand, within SGL_RS16405at 3126.985 kb on + strand, within SGL_RS16405at 3127.159 kb on - strand, within SGL_RS16405at 3127.160 kb on - strand, within SGL_RS16405at 3127.286 kb on + strandat 3128.073 kb on + strand, within SGL_RS16415at 3128.335 kb on - strandat 3128.381 kb on - strandat 3128.392 kb on - strandat 3128.529 kb on + strandat 3128.669 kb on - strandat 3128.669 kb on - strandat 3128.738 kb on + strandat 3128.743 kb on + strandat 3128.792 kb on - strand, within SGL_RS16420at 3128.843 kb on - strand, within SGL_RS16420at 3128.878 kb on - strand, within SGL_RS16420at 3128.906 kb on + strand, within SGL_RS16420at 3128.915 kb on - strand, within SGL_RS16420at 3128.979 kb on + strand, within SGL_RS16420at 3128.986 kb on + strand, within SGL_RS16420at 3128.988 kb on + strand, within SGL_RS16420at 3129.013 kb on - strand, within SGL_RS16420at 3129.065 kb on - strand, within SGL_RS16420at 3129.067 kb on - strand, within SGL_RS16420at 3129.090 kb on - strand, within SGL_RS16420at 3129.254 kb on + strand, within SGL_RS16420

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
remove
3,126,957 + SGL_RS16405 0.63 -1.0
3,126,985 + SGL_RS16405 0.65 +0.0
3,127,159 - SGL_RS16405 0.82 -0.6
3,127,160 - SGL_RS16405 0.82 +0.3
3,127,286 + +0.1
3,128,073 + SGL_RS16415 0.46 -0.4
3,128,335 - +0.3
3,128,381 - -0.1
3,128,392 - -0.6
3,128,529 + -0.0
3,128,669 - -0.0
3,128,669 - -0.1
3,128,738 + +0.4
3,128,743 + -0.4
3,128,792 - SGL_RS16420 0.11 -0.3
3,128,843 - SGL_RS16420 0.13 +0.1
3,128,878 - SGL_RS16420 0.14 -0.3
3,128,906 + SGL_RS16420 0.14 +0.1
3,128,915 - SGL_RS16420 0.15 -0.1
3,128,979 + SGL_RS16420 0.16 +0.3
3,128,986 + SGL_RS16420 0.17 -0.7
3,128,988 + SGL_RS16420 0.17 +0.3
3,129,013 - SGL_RS16420 0.17 +0.1
3,129,065 - SGL_RS16420 0.19 +0.5
3,129,067 - SGL_RS16420 0.19 -0.0
3,129,090 - SGL_RS16420 0.20 +0.2
3,129,254 + SGL_RS16420 0.24 -0.1

Or see this region's nucleotide sequence