Experiment: high light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS19040 and SGL_RS14100 overlap by 14 nucleotides SGL_RS14100 and SGL_RS14105 are separated by 38 nucleotides SGL_RS14105 and SGL_RS14110 are separated by 187 nucleotides SGL_RS14110 and SGL_RS14115 overlap by 4 nucleotides
SGL_RS19040: SGL_RS19040 - hypothetical protein, at 2,622,526 to 2,622,981
_RS19040
SGL_RS14100: SGL_RS14100 - gamma-glutamylcyclotransferase, at 2,622,968 to 2,623,402
_RS14100
SGL_RS14105: SGL_RS14105 - 2-succinylbenzoate--CoA ligase, at 2,623,441 to 2,624,907
_RS14105
SGL_RS14110: SGL_RS14110 - phosphomannose isomerase type II C-terminal cupin domain, at 2,625,095 to 2,625,481
_RS14110
SGL_RS14115: SGL_RS14115 - NAD(P)-dependent oxidoreductase, at 2,625,478 to 2,626,479
_RS14115
Position (kb)
2623
2624
2625 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2622.544 kb on + strand at 2622.628 kb on - strand, within SGL_RS19040 at 2622.631 kb on - strand, within SGL_RS19040 at 2622.748 kb on + strand, within SGL_RS19040 at 2622.840 kb on - strand, within SGL_RS19040 at 2622.966 kb on - strand at 2623.080 kb on + strand, within SGL_RS14100 at 2623.085 kb on + strand, within SGL_RS14100 at 2623.236 kb on - strand, within SGL_RS14100 at 2623.247 kb on + strand, within SGL_RS14100 at 2623.370 kb on - strand at 2623.404 kb on - strand at 2624.028 kb on - strand, within SGL_RS14105 at 2624.052 kb on - strand, within SGL_RS14105 at 2624.055 kb on + strand, within SGL_RS14105 at 2624.130 kb on - strand, within SGL_RS14105 at 2624.147 kb on + strand, within SGL_RS14105 at 2624.147 kb on + strand, within SGL_RS14105 at 2624.256 kb on - strand, within SGL_RS14105 at 2624.335 kb on - strand, within SGL_RS14105 at 2624.335 kb on - strand, within SGL_RS14105 at 2624.736 kb on - strand, within SGL_RS14105 at 2624.752 kb on - strand, within SGL_RS14105 at 2624.781 kb on - strand at 2624.910 kb on + strand at 2625.020 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction high light; bubbling remove 2,622,544 + +0.3 2,622,628 - SGL_RS19040 0.22 +0.7 2,622,631 - SGL_RS19040 0.23 -0.2 2,622,748 + SGL_RS19040 0.49 +0.4 2,622,840 - SGL_RS19040 0.69 +0.6 2,622,966 - +0.0 2,623,080 + SGL_RS14100 0.26 -0.6 2,623,085 + SGL_RS14100 0.27 -0.5 2,623,236 - SGL_RS14100 0.62 +0.8 2,623,247 + SGL_RS14100 0.64 -0.0 2,623,370 - +0.7 2,623,404 - +0.1 2,624,028 - SGL_RS14105 0.40 -3.7 2,624,052 - SGL_RS14105 0.42 -2.0 2,624,055 + SGL_RS14105 0.42 -0.6 2,624,130 - SGL_RS14105 0.47 -2.4 2,624,147 + SGL_RS14105 0.48 -3.6 2,624,147 + SGL_RS14105 0.48 -3.0 2,624,256 - SGL_RS14105 0.56 -3.0 2,624,335 - SGL_RS14105 0.61 +0.4 2,624,335 - SGL_RS14105 0.61 -1.2 2,624,736 - SGL_RS14105 0.88 -2.8 2,624,752 - SGL_RS14105 0.89 -2.4 2,624,781 - -2.4 2,624,910 + +0.7 2,625,020 - +2.0
Or see this region's nucleotide sequence