Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS14105

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS19040 and SGL_RS14100 overlap by 14 nucleotidesSGL_RS14100 and SGL_RS14105 are separated by 38 nucleotidesSGL_RS14105 and SGL_RS14110 are separated by 187 nucleotidesSGL_RS14110 and SGL_RS14115 overlap by 4 nucleotides SGL_RS19040: SGL_RS19040 - hypothetical protein, at 2,622,526 to 2,622,981 _RS19040 SGL_RS14100: SGL_RS14100 - gamma-glutamylcyclotransferase, at 2,622,968 to 2,623,402 _RS14100 SGL_RS14105: SGL_RS14105 - 2-succinylbenzoate--CoA ligase, at 2,623,441 to 2,624,907 _RS14105 SGL_RS14110: SGL_RS14110 - phosphomannose isomerase type II C-terminal cupin domain, at 2,625,095 to 2,625,481 _RS14110 SGL_RS14115: SGL_RS14115 - NAD(P)-dependent oxidoreductase, at 2,625,478 to 2,626,479 _RS14115 Position (kb) 2623 2624 2625Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2622.544 kb on + strandat 2622.628 kb on - strand, within SGL_RS19040at 2622.631 kb on - strand, within SGL_RS19040at 2622.748 kb on + strand, within SGL_RS19040at 2622.840 kb on - strand, within SGL_RS19040at 2622.966 kb on - strandat 2623.080 kb on + strand, within SGL_RS14100at 2623.085 kb on + strand, within SGL_RS14100at 2623.236 kb on - strand, within SGL_RS14100at 2623.247 kb on + strand, within SGL_RS14100at 2623.370 kb on - strandat 2623.404 kb on - strandat 2624.028 kb on - strand, within SGL_RS14105at 2624.052 kb on - strand, within SGL_RS14105at 2624.055 kb on + strand, within SGL_RS14105at 2624.130 kb on - strand, within SGL_RS14105at 2624.147 kb on + strand, within SGL_RS14105at 2624.147 kb on + strand, within SGL_RS14105at 2624.256 kb on - strand, within SGL_RS14105at 2624.335 kb on - strand, within SGL_RS14105at 2624.335 kb on - strand, within SGL_RS14105at 2624.736 kb on - strand, within SGL_RS14105at 2624.752 kb on - strand, within SGL_RS14105at 2624.781 kb on - strandat 2624.910 kb on + strandat 2625.020 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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2,622,544 + +0.3
2,622,628 - SGL_RS19040 0.22 +0.7
2,622,631 - SGL_RS19040 0.23 -0.2
2,622,748 + SGL_RS19040 0.49 +0.4
2,622,840 - SGL_RS19040 0.69 +0.6
2,622,966 - +0.0
2,623,080 + SGL_RS14100 0.26 -0.6
2,623,085 + SGL_RS14100 0.27 -0.5
2,623,236 - SGL_RS14100 0.62 +0.8
2,623,247 + SGL_RS14100 0.64 -0.0
2,623,370 - +0.7
2,623,404 - +0.1
2,624,028 - SGL_RS14105 0.40 -3.7
2,624,052 - SGL_RS14105 0.42 -2.0
2,624,055 + SGL_RS14105 0.42 -0.6
2,624,130 - SGL_RS14105 0.47 -2.4
2,624,147 + SGL_RS14105 0.48 -3.6
2,624,147 + SGL_RS14105 0.48 -3.0
2,624,256 - SGL_RS14105 0.56 -3.0
2,624,335 - SGL_RS14105 0.61 +0.4
2,624,335 - SGL_RS14105 0.61 -1.2
2,624,736 - SGL_RS14105 0.88 -2.8
2,624,752 - SGL_RS14105 0.89 -2.4
2,624,781 - -2.4
2,624,910 + +0.7
2,625,020 - +2.0

Or see this region's nucleotide sequence