Experiment: high light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS12445 and SGL_RS12450 are separated by 94 nucleotides SGL_RS12450 and SGL_RS12455 are separated by 64 nucleotides SGL_RS12455 and SGL_RS12460 are separated by 236 nucleotides
SGL_RS12445: SGL_RS12445 - alpha/beta hydrolase, at 2,246,867 to 2,248,483
_RS12445
SGL_RS12450: SGL_RS12450 - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, at 2,248,578 to 2,250,176
_RS12450
SGL_RS12455: SGL_RS12455 - preprotein translocase subunit SecG, at 2,250,241 to 2,250,474
_RS12455
SGL_RS12460: SGL_RS12460 - matrixin family metalloprotease, at 2,250,711 to 2,251,496
_RS12460
Position (kb)
2248
2249
2250
2251 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 2247.578 kb on - strand, within SGL_RS12445 at 2247.580 kb on - strand, within SGL_RS12445 at 2247.707 kb on + strand, within SGL_RS12445 at 2247.769 kb on - strand, within SGL_RS12445 at 2247.785 kb on - strand, within SGL_RS12445 at 2247.899 kb on + strand, within SGL_RS12445 at 2247.940 kb on + strand, within SGL_RS12445 at 2247.971 kb on + strand, within SGL_RS12445 at 2247.971 kb on + strand, within SGL_RS12445 at 2247.995 kb on - strand, within SGL_RS12445 at 2248.014 kb on + strand, within SGL_RS12445 at 2248.238 kb on - strand, within SGL_RS12445 at 2248.291 kb on + strand, within SGL_RS12445 at 2248.298 kb on + strand, within SGL_RS12445 at 2248.472 kb on - strand at 2248.498 kb on - strand at 2248.551 kb on + strand at 2250.125 kb on + strand at 2250.145 kb on - strand at 2250.604 kb on - strand at 2250.781 kb on - strand at 2250.949 kb on - strand, within SGL_RS12460 at 2251.044 kb on - strand, within SGL_RS12460
Per-strain Table
Position Strand Gene LocusTag Fraction high light; bubbling remove 2,247,578 - SGL_RS12445 0.44 -0.4 2,247,580 - SGL_RS12445 0.44 -0.3 2,247,707 + SGL_RS12445 0.52 +0.3 2,247,769 - SGL_RS12445 0.56 +0.8 2,247,785 - SGL_RS12445 0.57 -0.2 2,247,899 + SGL_RS12445 0.64 -0.6 2,247,940 + SGL_RS12445 0.66 -0.6 2,247,971 + SGL_RS12445 0.68 -1.3 2,247,971 + SGL_RS12445 0.68 -0.2 2,247,995 - SGL_RS12445 0.70 -0.1 2,248,014 + SGL_RS12445 0.71 +0.5 2,248,238 - SGL_RS12445 0.85 -0.3 2,248,291 + SGL_RS12445 0.88 -0.1 2,248,298 + SGL_RS12445 0.88 -0.1 2,248,472 - -0.1 2,248,498 - -0.7 2,248,551 + -3.9 2,250,125 + +0.0 2,250,145 - -1.1 2,250,604 - +1.1 2,250,781 - +0.6 2,250,949 - SGL_RS12460 0.30 +0.4 2,251,044 - SGL_RS12460 0.42 +0.0
Or see this region's nucleotide sequence