Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS11420

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS11410 and SGL_RS11415 are separated by 216 nucleotidesSGL_RS11415 and SGL_RS11420 are separated by 83 nucleotidesSGL_RS11420 and SGL_RS11425 are separated by 206 nucleotides SGL_RS11410: SGL_RS11410 - DnaJ family molecular chaperone, at 2,020,349 to 2,021,035 _RS11410 SGL_RS11415: SGL_RS11415 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, at 2,021,252 to 2,021,944 _RS11415 SGL_RS11420: SGL_RS11420 - class 1 fructose-bisphosphatase, at 2,022,028 to 2,023,071 _RS11420 SGL_RS11425: SGL_RS11425 - sucrose-phosphate phosphatase, at 2,023,278 to 2,024,012 _RS11425 Position (kb) 2022 2023 2024Strain fitness (log2 ratio) -2 -1 0 1at 2021.040 kb on - strandat 2021.146 kb on + strandat 2021.147 kb on + strandat 2021.219 kb on - strandat 2021.467 kb on - strand, within SGL_RS11415at 2021.763 kb on - strand, within SGL_RS11415at 2022.032 kb on + strandat 2022.067 kb on - strandat 2022.072 kb on + strandat 2022.163 kb on + strand, within SGL_RS11420at 2022.169 kb on + strand, within SGL_RS11420at 2022.486 kb on - strand, within SGL_RS11420at 2022.593 kb on + strand, within SGL_RS11420at 2022.608 kb on + strand, within SGL_RS11420at 2022.719 kb on + strand, within SGL_RS11420at 2022.770 kb on - strand, within SGL_RS11420at 2022.772 kb on + strand, within SGL_RS11420at 2022.792 kb on + strand, within SGL_RS11420at 2022.793 kb on - strand, within SGL_RS11420at 2022.895 kb on - strand, within SGL_RS11420at 2022.926 kb on - strand, within SGL_RS11420at 2022.929 kb on + strand, within SGL_RS11420at 2023.193 kb on + strandat 2023.193 kb on + strandat 2023.307 kb on + strandat 2023.308 kb on + strandat 2023.318 kb on + strandat 2023.439 kb on + strand, within SGL_RS11425at 2023.443 kb on + strand, within SGL_RS11425at 2023.465 kb on + strand, within SGL_RS11425at 2023.509 kb on + strand, within SGL_RS11425at 2023.874 kb on + strand, within SGL_RS11425at 2023.915 kb on + strand, within SGL_RS11425

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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2,021,040 - +0.6
2,021,146 + -0.3
2,021,147 + +0.2
2,021,219 - -1.4
2,021,467 - SGL_RS11415 0.31 -2.4
2,021,763 - SGL_RS11415 0.74 -2.1
2,022,032 + +0.4
2,022,067 - -0.3
2,022,072 + -0.8
2,022,163 + SGL_RS11420 0.13 -0.7
2,022,169 + SGL_RS11420 0.14 -0.1
2,022,486 - SGL_RS11420 0.44 -1.1
2,022,593 + SGL_RS11420 0.54 +0.1
2,022,608 + SGL_RS11420 0.56 -0.2
2,022,719 + SGL_RS11420 0.66 -0.6
2,022,770 - SGL_RS11420 0.71 -0.1
2,022,772 + SGL_RS11420 0.71 -0.9
2,022,792 + SGL_RS11420 0.73 -0.6
2,022,793 - SGL_RS11420 0.73 -1.0
2,022,895 - SGL_RS11420 0.83 +0.0
2,022,926 - SGL_RS11420 0.86 -0.3
2,022,929 + SGL_RS11420 0.86 -1.0
2,023,193 + -0.3
2,023,193 + +0.3
2,023,307 + +0.6
2,023,308 + +0.3
2,023,318 + +0.4
2,023,439 + SGL_RS11425 0.22 +0.3
2,023,443 + SGL_RS11425 0.22 +0.2
2,023,465 + SGL_RS11425 0.25 +0.3
2,023,509 + SGL_RS11425 0.31 +0.6
2,023,874 + SGL_RS11425 0.81 +0.3
2,023,915 + SGL_RS11425 0.87 +0.9

Or see this region's nucleotide sequence