Experiment: high light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS11410 and SGL_RS11415 are separated by 216 nucleotides SGL_RS11415 and SGL_RS11420 are separated by 83 nucleotides SGL_RS11420 and SGL_RS11425 are separated by 206 nucleotides
SGL_RS11410: SGL_RS11410 - DnaJ family molecular chaperone, at 2,020,349 to 2,021,035
_RS11410
SGL_RS11415: SGL_RS11415 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, at 2,021,252 to 2,021,944
_RS11415
SGL_RS11420: SGL_RS11420 - class 1 fructose-bisphosphatase, at 2,022,028 to 2,023,071
_RS11420
SGL_RS11425: SGL_RS11425 - sucrose-phosphate phosphatase, at 2,023,278 to 2,024,012
_RS11425
Position (kb)
2022
2023
2024 Strain fitness (log2 ratio)
-2
-1
0
1 at 2021.040 kb on - strand at 2021.146 kb on + strand at 2021.147 kb on + strand at 2021.219 kb on - strand at 2021.467 kb on - strand, within SGL_RS11415 at 2021.763 kb on - strand, within SGL_RS11415 at 2022.032 kb on + strand at 2022.067 kb on - strand at 2022.072 kb on + strand at 2022.163 kb on + strand, within SGL_RS11420 at 2022.169 kb on + strand, within SGL_RS11420 at 2022.486 kb on - strand, within SGL_RS11420 at 2022.593 kb on + strand, within SGL_RS11420 at 2022.608 kb on + strand, within SGL_RS11420 at 2022.719 kb on + strand, within SGL_RS11420 at 2022.770 kb on - strand, within SGL_RS11420 at 2022.772 kb on + strand, within SGL_RS11420 at 2022.792 kb on + strand, within SGL_RS11420 at 2022.793 kb on - strand, within SGL_RS11420 at 2022.895 kb on - strand, within SGL_RS11420 at 2022.926 kb on - strand, within SGL_RS11420 at 2022.929 kb on + strand, within SGL_RS11420 at 2023.193 kb on + strand at 2023.193 kb on + strand at 2023.307 kb on + strand at 2023.308 kb on + strand at 2023.318 kb on + strand at 2023.439 kb on + strand, within SGL_RS11425 at 2023.443 kb on + strand, within SGL_RS11425 at 2023.465 kb on + strand, within SGL_RS11425 at 2023.509 kb on + strand, within SGL_RS11425 at 2023.874 kb on + strand, within SGL_RS11425 at 2023.915 kb on + strand, within SGL_RS11425
Per-strain Table
Position Strand Gene LocusTag Fraction high light; bubbling remove 2,021,040 - +0.6 2,021,146 + -0.3 2,021,147 + +0.2 2,021,219 - -1.4 2,021,467 - SGL_RS11415 0.31 -2.4 2,021,763 - SGL_RS11415 0.74 -2.1 2,022,032 + +0.4 2,022,067 - -0.3 2,022,072 + -0.8 2,022,163 + SGL_RS11420 0.13 -0.7 2,022,169 + SGL_RS11420 0.14 -0.1 2,022,486 - SGL_RS11420 0.44 -1.1 2,022,593 + SGL_RS11420 0.54 +0.1 2,022,608 + SGL_RS11420 0.56 -0.2 2,022,719 + SGL_RS11420 0.66 -0.6 2,022,770 - SGL_RS11420 0.71 -0.1 2,022,772 + SGL_RS11420 0.71 -0.9 2,022,792 + SGL_RS11420 0.73 -0.6 2,022,793 - SGL_RS11420 0.73 -1.0 2,022,895 - SGL_RS11420 0.83 +0.0 2,022,926 - SGL_RS11420 0.86 -0.3 2,022,929 + SGL_RS11420 0.86 -1.0 2,023,193 + -0.3 2,023,193 + +0.3 2,023,307 + +0.6 2,023,308 + +0.3 2,023,318 + +0.4 2,023,439 + SGL_RS11425 0.22 +0.3 2,023,443 + SGL_RS11425 0.22 +0.2 2,023,465 + SGL_RS11425 0.25 +0.3 2,023,509 + SGL_RS11425 0.31 +0.6 2,023,874 + SGL_RS11425 0.81 +0.3 2,023,915 + SGL_RS11425 0.87 +0.9
Or see this region's nucleotide sequence