Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS11050

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS11040 and SGL_RS11045 are separated by 202 nucleotidesSGL_RS11045 and SGL_RS11050 are separated by 26 nucleotidesSGL_RS11050 and SGL_RS11055 are separated by 83 nucleotidesSGL_RS11055 and SGL_RS11060 are separated by 42 nucleotides SGL_RS11040: SGL_RS11040 - TMEM165/GDT1 family protein, at 1,938,429 to 1,938,782 _RS11040 SGL_RS11045: SGL_RS11045 - glutathione peroxidase, at 1,938,985 to 1,939,494 _RS11045 SGL_RS11050: SGL_RS11050 - DUF3493 domain-containing protein, at 1,939,521 to 1,939,781 _RS11050 SGL_RS11055: SGL_RS11055 - hypothetical protein, at 1,939,865 to 1,940,506 _RS11055 SGL_RS11060: SGL_RS11060 - sodium:solute symporter, at 1,940,549 to 1,942,087 _RS11060 Position (kb) 1939 1940Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 1938.572 kb on + strand, within SGL_RS11040at 1938.595 kb on - strand, within SGL_RS11040at 1938.647 kb on - strand, within SGL_RS11040at 1938.659 kb on + strand, within SGL_RS11040at 1939.124 kb on + strand, within SGL_RS11045at 1939.174 kb on - strand, within SGL_RS11045at 1939.558 kb on - strand, within SGL_RS11050at 1939.558 kb on - strand, within SGL_RS11050at 1939.931 kb on + strand, within SGL_RS11055at 1940.041 kb on + strand, within SGL_RS11055at 1940.080 kb on - strand, within SGL_RS11055at 1940.116 kb on - strand, within SGL_RS11055at 1940.246 kb on - strand, within SGL_RS11055at 1940.343 kb on + strand, within SGL_RS11055at 1940.602 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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1,938,572 + SGL_RS11040 0.40 -4.4
1,938,595 - SGL_RS11040 0.47 -4.2
1,938,647 - SGL_RS11040 0.62 -3.7
1,938,659 + SGL_RS11040 0.65 -5.0
1,939,124 + SGL_RS11045 0.27 -0.3
1,939,174 - SGL_RS11045 0.37 -0.8
1,939,558 - SGL_RS11050 0.14 -1.8
1,939,558 - SGL_RS11050 0.14 +2.2
1,939,931 + SGL_RS11055 0.10 +0.2
1,940,041 + SGL_RS11055 0.27 -0.5
1,940,080 - SGL_RS11055 0.33 -0.6
1,940,116 - SGL_RS11055 0.39 -0.7
1,940,246 - SGL_RS11055 0.59 +1.7
1,940,343 + SGL_RS11055 0.74 -1.1
1,940,602 + -0.4

Or see this region's nucleotide sequence