Experiment: high light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS10540 and SGL_RS10545 are separated by 6 nucleotides SGL_RS10545 and SGL_RS10550 are separated by 65 nucleotides SGL_RS10550 and SGL_RS10555 are separated by 208 nucleotides
SGL_RS10540: SGL_RS10540 - C40 family peptidase, at 1,832,360 to 1,833,169
_RS10540
SGL_RS10545: SGL_RS10545 - hypothetical protein, at 1,833,176 to 1,833,589
_RS10545
SGL_RS10550: SGL_RS10550 - GUN4 domain-containing protein, at 1,833,655 to 1,834,299
_RS10550
SGL_RS10555: SGL_RS10555 - aspartate carbamoyltransferase, at 1,834,508 to 1,835,503
_RS10555
Position (kb)
1833
1834
1835 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1833.154 kb on - strand at 1833.250 kb on - strand, within SGL_RS10545 at 1833.290 kb on + strand, within SGL_RS10545 at 1833.378 kb on + strand, within SGL_RS10545 at 1833.554 kb on - strand at 1833.590 kb on + strand at 1833.598 kb on + strand at 1833.689 kb on - strand at 1833.983 kb on + strand, within SGL_RS10550 at 1833.991 kb on - strand, within SGL_RS10550 at 1834.051 kb on + strand, within SGL_RS10550 at 1834.059 kb on - strand, within SGL_RS10550 at 1834.059 kb on - strand, within SGL_RS10550 at 1834.220 kb on - strand, within SGL_RS10550 at 1834.347 kb on + strand at 1834.401 kb on - strand at 1834.486 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction high light; bubbling remove 1,833,154 - +0.3 1,833,250 - SGL_RS10545 0.18 -0.1 1,833,290 + SGL_RS10545 0.28 -0.1 1,833,378 + SGL_RS10545 0.49 +2.1 1,833,554 - -0.3 1,833,590 + -0.2 1,833,598 + -1.0 1,833,689 - +0.0 1,833,983 + SGL_RS10550 0.51 -0.9 1,833,991 - SGL_RS10550 0.52 -0.3 1,834,051 + SGL_RS10550 0.61 -0.7 1,834,059 - SGL_RS10550 0.63 -1.5 1,834,059 - SGL_RS10550 0.63 -0.9 1,834,220 - SGL_RS10550 0.88 -0.9 1,834,347 + -0.6 1,834,401 - -0.4 1,834,486 - -2.3
Or see this region's nucleotide sequence