Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS09915

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS09905 and SGL_RS09910 are separated by 65 nucleotidesSGL_RS09910 and SGL_RS09915 are separated by 66 nucleotidesSGL_RS09915 and SGL_RS09920 are separated by 68 nucleotides SGL_RS09905: SGL_RS09905 - biotin/lipoate A/B protein ligase family protein, at 1,703,426 to 1,704,172 _RS09905 SGL_RS09910: SGL_RS09910 - tRNA-Gly, at 1,704,238 to 1,704,308 _RS09910 SGL_RS09915: SGL_RS09915 - isochorismate synthase, at 1,704,375 to 1,705,799 _RS09915 SGL_RS09920: SGL_RS09920 - hypothetical protein, at 1,705,868 to 1,707,223 _RS09920 Position (kb) 1704 1705 1706Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1703.450 kb on + strandat 1703.450 kb on + strandat 1703.458 kb on - strandat 1703.503 kb on - strand, within SGL_RS09905at 1703.644 kb on + strand, within SGL_RS09905at 1703.695 kb on + strand, within SGL_RS09905at 1703.705 kb on + strand, within SGL_RS09905at 1703.759 kb on - strand, within SGL_RS09905at 1703.779 kb on - strand, within SGL_RS09905at 1703.783 kb on + strand, within SGL_RS09905at 1703.796 kb on - strand, within SGL_RS09905at 1703.796 kb on - strand, within SGL_RS09905at 1703.897 kb on + strand, within SGL_RS09905at 1703.899 kb on - strand, within SGL_RS09905at 1703.905 kb on - strand, within SGL_RS09905at 1703.916 kb on + strand, within SGL_RS09905at 1703.928 kb on + strand, within SGL_RS09905at 1704.024 kb on - strand, within SGL_RS09905at 1704.496 kb on + strandat 1704.966 kb on + strand, within SGL_RS09915at 1704.968 kb on + strand, within SGL_RS09915at 1705.617 kb on + strand, within SGL_RS09915at 1705.625 kb on - strand, within SGL_RS09915at 1705.874 kb on - strandat 1705.958 kb on + strandat 1706.020 kb on + strand, within SGL_RS09920at 1706.044 kb on + strand, within SGL_RS09920at 1706.081 kb on - strand, within SGL_RS09920at 1706.098 kb on + strand, within SGL_RS09920at 1706.106 kb on - strand, within SGL_RS09920at 1706.152 kb on - strand, within SGL_RS09920at 1706.210 kb on - strand, within SGL_RS09920at 1706.210 kb on - strand, within SGL_RS09920at 1706.210 kb on - strand, within SGL_RS09920at 1706.210 kb on - strand, within SGL_RS09920at 1706.256 kb on + strand, within SGL_RS09920at 1706.296 kb on - strand, within SGL_RS09920at 1706.347 kb on + strand, within SGL_RS09920at 1706.499 kb on - strand, within SGL_RS09920at 1706.503 kb on + strand, within SGL_RS09920at 1706.560 kb on - strand, within SGL_RS09920at 1706.603 kb on - strand, within SGL_RS09920at 1706.736 kb on + strand, within SGL_RS09920at 1706.747 kb on + strand, within SGL_RS09920

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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1,703,450 + +0.7
1,703,450 + -0.8
1,703,458 - -2.6
1,703,503 - SGL_RS09905 0.10 -3.4
1,703,644 + SGL_RS09905 0.29 -3.5
1,703,695 + SGL_RS09905 0.36 -3.4
1,703,705 + SGL_RS09905 0.37 -3.6
1,703,759 - SGL_RS09905 0.45 -3.0
1,703,779 - SGL_RS09905 0.47 -1.8
1,703,783 + SGL_RS09905 0.48 -0.8
1,703,796 - SGL_RS09905 0.50 -2.8
1,703,796 - SGL_RS09905 0.50 -2.2
1,703,897 + SGL_RS09905 0.63 -3.8
1,703,899 - SGL_RS09905 0.63 -2.4
1,703,905 - SGL_RS09905 0.64 -1.4
1,703,916 + SGL_RS09905 0.66 -3.2
1,703,928 + SGL_RS09905 0.67 -1.8
1,704,024 - SGL_RS09905 0.80 -3.0
1,704,496 + -2.4
1,704,966 + SGL_RS09915 0.41 -2.8
1,704,968 + SGL_RS09915 0.42 -2.2
1,705,617 + SGL_RS09915 0.87 -2.8
1,705,625 - SGL_RS09915 0.88 -1.4
1,705,874 - -0.1
1,705,958 + +0.1
1,706,020 + SGL_RS09920 0.11 +0.1
1,706,044 + SGL_RS09920 0.13 +0.2
1,706,081 - SGL_RS09920 0.16 +0.5
1,706,098 + SGL_RS09920 0.17 +0.3
1,706,106 - SGL_RS09920 0.18 +1.3
1,706,152 - SGL_RS09920 0.21 +0.2
1,706,210 - SGL_RS09920 0.25 +0.8
1,706,210 - SGL_RS09920 0.25 +0.2
1,706,210 - SGL_RS09920 0.25 +0.0
1,706,210 - SGL_RS09920 0.25 +0.6
1,706,256 + SGL_RS09920 0.29 +0.2
1,706,296 - SGL_RS09920 0.32 +0.7
1,706,347 + SGL_RS09920 0.35 -0.1
1,706,499 - SGL_RS09920 0.47 +0.1
1,706,503 + SGL_RS09920 0.47 +0.2
1,706,560 - SGL_RS09920 0.51 +0.2
1,706,603 - SGL_RS09920 0.54 +0.3
1,706,736 + SGL_RS09920 0.64 +0.1
1,706,747 + SGL_RS09920 0.65 +0.6

Or see this region's nucleotide sequence