Experiment: high light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS09375 and SGL_RS09380 are separated by 218 nucleotides SGL_RS09380 and SGL_RS09385 are separated by 20 nucleotides SGL_RS09385 and SGL_RS09390 are separated by 25 nucleotides SGL_RS09390 and SGL_RS09395 are separated by 109 nucleotides
SGL_RS09375: SGL_RS09375 - 3-isopropylmalate dehydrogenase, at 1,608,232 to 1,609,320
_RS09375
SGL_RS09380: SGL_RS09380 - hypothetical protein, at 1,609,539 to 1,609,805
_RS09380
SGL_RS09385: SGL_RS09385 - 2-carboxy-1,4-naphthoquinone phytyltransferase, at 1,609,826 to 1,610,749
_RS09385
SGL_RS09390: SGL_RS09390 - pentapeptide repeat-containing protein, at 1,610,775 to 1,611,464
_RS09390
SGL_RS09395: SGL_RS09395 - aldo/keto reductase, at 1,611,574 to 1,612,629
_RS09395
Position (kb) 1609
1610
1611 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 1609.415 kb on + strand at 1609.456 kb on - strand at 1609.508 kb on + strand at 1609.574 kb on + strand, within SGL_RS09380 at 1609.583 kb on - strand, within SGL_RS09380 at 1609.654 kb on - strand, within SGL_RS09380 at 1609.666 kb on + strand, within SGL_RS09380 at 1609.750 kb on - strand, within SGL_RS09380 at 1609.775 kb on - strand, within SGL_RS09380 at 1610.241 kb on - strand, within SGL_RS09385 at 1610.271 kb on + strand, within SGL_RS09385 at 1610.434 kb on + strand, within SGL_RS09385 at 1610.441 kb on - strand, within SGL_RS09385 at 1610.602 kb on + strand, within SGL_RS09385 at 1610.610 kb on - strand, within SGL_RS09385 at 1610.738 kb on + strand at 1610.804 kb on - strand at 1610.881 kb on + strand, within SGL_RS09390 at 1610.889 kb on - strand, within SGL_RS09390 at 1610.889 kb on - strand, within SGL_RS09390 at 1610.916 kb on + strand, within SGL_RS09390 at 1610.918 kb on - strand, within SGL_RS09390 at 1610.919 kb on - strand, within SGL_RS09390 at 1611.029 kb on - strand, within SGL_RS09390 at 1611.046 kb on + strand, within SGL_RS09390 at 1611.075 kb on - strand, within SGL_RS09390 at 1611.174 kb on - strand, within SGL_RS09390 at 1611.182 kb on + strand, within SGL_RS09390 at 1611.189 kb on - strand, within SGL_RS09390 at 1611.198 kb on + strand, within SGL_RS09390 at 1611.203 kb on + strand, within SGL_RS09390 at 1611.224 kb on - strand, within SGL_RS09390 at 1611.321 kb on + strand, within SGL_RS09390 at 1611.421 kb on + strand at 1611.748 kb on + strand, within SGL_RS09395
Per-strain Table
Position Strand Gene LocusTag Fraction high light; bubbling remove 1,609,415 + +0.1 1,609,456 - -0.4 1,609,508 + -0.6 1,609,574 + SGL_RS09380 0.13 -0.8 1,609,583 - SGL_RS09380 0.16 -4.9 1,609,654 - SGL_RS09380 0.43 -1.9 1,609,666 + SGL_RS09380 0.48 +0.9 1,609,750 - SGL_RS09380 0.79 -4.4 1,609,775 - SGL_RS09380 0.88 +0.1 1,610,241 - SGL_RS09385 0.45 -2.4 1,610,271 + SGL_RS09385 0.48 -2.4 1,610,434 + SGL_RS09385 0.66 -2.9 1,610,441 - SGL_RS09385 0.67 -3.0 1,610,602 + SGL_RS09385 0.84 -1.4 1,610,610 - SGL_RS09385 0.85 -2.2 1,610,738 + -1.8 1,610,804 - +1.3 1,610,881 + SGL_RS09390 0.15 +0.5 1,610,889 - SGL_RS09390 0.17 +0.9 1,610,889 - SGL_RS09390 0.17 +1.0 1,610,916 + SGL_RS09390 0.20 -1.3 1,610,918 - SGL_RS09390 0.21 +2.6 1,610,919 - SGL_RS09390 0.21 +1.1 1,611,029 - SGL_RS09390 0.37 +0.9 1,611,046 + SGL_RS09390 0.39 -0.7 1,611,075 - SGL_RS09390 0.43 +0.0 1,611,174 - SGL_RS09390 0.58 +1.3 1,611,182 + SGL_RS09390 0.59 -0.0 1,611,189 - SGL_RS09390 0.60 +1.1 1,611,198 + SGL_RS09390 0.61 +0.4 1,611,203 + SGL_RS09390 0.62 -0.1 1,611,224 - SGL_RS09390 0.65 +1.1 1,611,321 + SGL_RS09390 0.79 +0.2 1,611,421 + -0.0 1,611,748 + SGL_RS09395 0.16 -1.4
Or see this region's nucleotide sequence