Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS07865

Experiment: high light; bubbling

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS07855 and SGL_RS07860 are separated by 24 nucleotidesSGL_RS07860 and SGL_RS07865 are separated by 23 nucleotidesSGL_RS07865 and SGL_RS07870 overlap by 4 nucleotidesSGL_RS07870 and SGL_RS07875 are separated by 38 nucleotides SGL_RS07855: SGL_RS07855 - MASE1 domain-containing protein, at 1,278,326 to 1,280,542 _RS07855 SGL_RS07860: SGL_RS07860 - SDR family NAD(P)-dependent oxidoreductase, at 1,280,567 to 1,281,337 _RS07860 SGL_RS07865: SGL_RS07865 - signal peptide peptidase SppA, at 1,281,361 to 1,283,193 _RS07865 SGL_RS07870: SGL_RS07870 - Ycf51 family protein, at 1,283,190 to 1,283,702 _RS07870 SGL_RS07875: SGL_RS07875 - alpha/beta hydrolase, at 1,283,741 to 1,284,526 _RS07875 Position (kb) 1281 1282 1283 1284Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1280.396 kb on - strandat 1280.426 kb on + strandat 1280.436 kb on + strandat 1280.527 kb on + strandat 1280.587 kb on + strandat 1280.706 kb on + strand, within SGL_RS07860at 1280.860 kb on + strand, within SGL_RS07860at 1280.868 kb on - strand, within SGL_RS07860at 1280.995 kb on + strand, within SGL_RS07860at 1281.502 kb on - strandat 1281.683 kb on + strand, within SGL_RS07865at 1281.688 kb on + strand, within SGL_RS07865at 1281.703 kb on + strand, within SGL_RS07865at 1281.703 kb on + strand, within SGL_RS07865at 1281.865 kb on + strand, within SGL_RS07865at 1281.943 kb on + strand, within SGL_RS07865at 1282.123 kb on - strand, within SGL_RS07865at 1282.142 kb on + strand, within SGL_RS07865at 1282.493 kb on - strand, within SGL_RS07865at 1282.596 kb on - strand, within SGL_RS07865at 1282.630 kb on + strand, within SGL_RS07865at 1282.975 kb on - strand, within SGL_RS07865at 1283.006 kb on - strand, within SGL_RS07865at 1283.012 kb on - strandat 1283.224 kb on + strandat 1283.301 kb on + strand, within SGL_RS07870at 1283.302 kb on + strand, within SGL_RS07870at 1283.320 kb on - strand, within SGL_RS07870at 1283.538 kb on + strand, within SGL_RS07870at 1283.539 kb on + strand, within SGL_RS07870at 1283.547 kb on - strand, within SGL_RS07870at 1283.762 kb on - strandat 1283.849 kb on + strand, within SGL_RS07875at 1283.857 kb on + strand, within SGL_RS07875at 1283.891 kb on - strand, within SGL_RS07875at 1283.893 kb on + strand, within SGL_RS07875at 1283.917 kb on + strand, within SGL_RS07875at 1283.920 kb on - strand, within SGL_RS07875at 1283.924 kb on + strand, within SGL_RS07875at 1283.924 kb on + strand, within SGL_RS07875at 1283.925 kb on - strand, within SGL_RS07875at 1283.955 kb on + strand, within SGL_RS07875at 1283.977 kb on - strand, within SGL_RS07875at 1284.000 kb on + strand, within SGL_RS07875at 1284.018 kb on - strand, within SGL_RS07875at 1284.018 kb on - strand, within SGL_RS07875at 1284.018 kb on - strand, within SGL_RS07875at 1284.071 kb on + strand, within SGL_RS07875at 1284.095 kb on + strand, within SGL_RS07875at 1284.097 kb on - strand, within SGL_RS07875at 1284.185 kb on - strand, within SGL_RS07875

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
remove
1,280,396 - -0.6
1,280,426 + -0.7
1,280,436 + -1.4
1,280,527 + -0.2
1,280,587 + -0.8
1,280,706 + SGL_RS07860 0.18 +0.4
1,280,860 + SGL_RS07860 0.38 +0.1
1,280,868 - SGL_RS07860 0.39 -0.3
1,280,995 + SGL_RS07860 0.56 +0.4
1,281,502 - +1.0
1,281,683 + SGL_RS07865 0.18 +1.2
1,281,688 + SGL_RS07865 0.18 +1.4
1,281,703 + SGL_RS07865 0.19 +1.2
1,281,703 + SGL_RS07865 0.19 +1.1
1,281,865 + SGL_RS07865 0.27 +1.5
1,281,943 + SGL_RS07865 0.32 +1.4
1,282,123 - SGL_RS07865 0.42 +1.6
1,282,142 + SGL_RS07865 0.43 +0.7
1,282,493 - SGL_RS07865 0.62 +1.3
1,282,596 - SGL_RS07865 0.67 +0.1
1,282,630 + SGL_RS07865 0.69 +1.5
1,282,975 - SGL_RS07865 0.88 +1.2
1,283,006 - SGL_RS07865 0.90 +1.4
1,283,012 - +1.3
1,283,224 + -5.0
1,283,301 + SGL_RS07870 0.22 -4.0
1,283,302 + SGL_RS07870 0.22 -4.3
1,283,320 - SGL_RS07870 0.25 -2.2
1,283,538 + SGL_RS07870 0.68 -4.0
1,283,539 + SGL_RS07870 0.68 -2.5
1,283,547 - SGL_RS07870 0.70 -3.2
1,283,762 - +0.3
1,283,849 + SGL_RS07875 0.14 -0.8
1,283,857 + SGL_RS07875 0.15 -0.2
1,283,891 - SGL_RS07875 0.19 +0.1
1,283,893 + SGL_RS07875 0.19 -0.3
1,283,917 + SGL_RS07875 0.22 +0.9
1,283,920 - SGL_RS07875 0.23 +0.2
1,283,924 + SGL_RS07875 0.23 -0.2
1,283,924 + SGL_RS07875 0.23 -0.4
1,283,925 - SGL_RS07875 0.23 +0.4
1,283,955 + SGL_RS07875 0.27 -0.6
1,283,977 - SGL_RS07875 0.30 +0.1
1,284,000 + SGL_RS07875 0.33 +0.3
1,284,018 - SGL_RS07875 0.35 -0.3
1,284,018 - SGL_RS07875 0.35 +0.2
1,284,018 - SGL_RS07875 0.35 +0.0
1,284,071 + SGL_RS07875 0.42 -0.1
1,284,095 + SGL_RS07875 0.45 -0.9
1,284,097 - SGL_RS07875 0.45 +0.1
1,284,185 - SGL_RS07875 0.56 +0.2

Or see this region's nucleotide sequence