Experiment: high light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS06890 and SGL_RS06895 are separated by 161 nucleotides SGL_RS06895 and SGL_RS20125 are separated by 186 nucleotides SGL_RS20125 and SGL_RS06900 are separated by 45 nucleotides SGL_RS06900 and SGL_RS06905 are separated by 19 nucleotides
SGL_RS06890: SGL_RS06890 - cupin domain-containing protein, at 1,071,734 to 1,072,918
_RS06890
SGL_RS06895: SGL_RS06895 - glycogen/starch/alpha-glucan phosphorylase, at 1,073,080 to 1,075,629
_RS06895
SGL_RS20125: SGL_RS20125 - hypothetical protein, at 1,075,816 to 1,075,950
_RS20125
SGL_RS06900: SGL_RS06900 - hypothetical protein, at 1,075,996 to 1,076,454
_RS06900
SGL_RS06905: SGL_RS06905 - Uma2 family endonuclease, at 1,076,474 to 1,077,010
_RS06905
Position (kb)
1073
1074
1075
1076 Strain fitness (log2 ratio)
-1
0
1 at 1072.212 kb on - strand, within SGL_RS06890 at 1072.254 kb on - strand, within SGL_RS06890 at 1072.259 kb on + strand, within SGL_RS06890 at 1072.259 kb on + strand, within SGL_RS06890 at 1072.267 kb on - strand, within SGL_RS06890 at 1072.377 kb on - strand, within SGL_RS06890 at 1072.393 kb on + strand, within SGL_RS06890 at 1072.435 kb on - strand, within SGL_RS06890 at 1072.454 kb on + strand, within SGL_RS06890 at 1072.462 kb on - strand, within SGL_RS06890 at 1072.481 kb on + strand, within SGL_RS06890 at 1072.584 kb on + strand, within SGL_RS06890 at 1072.640 kb on - strand, within SGL_RS06890 at 1072.778 kb on + strand, within SGL_RS06890 at 1073.341 kb on - strand, within SGL_RS06895 at 1074.064 kb on + strand, within SGL_RS06895 at 1074.171 kb on + strand, within SGL_RS06895 at 1074.179 kb on + strand, within SGL_RS06895 at 1074.231 kb on + strand, within SGL_RS06895 at 1074.263 kb on + strand, within SGL_RS06895 at 1074.281 kb on - strand, within SGL_RS06895 at 1074.536 kb on + strand, within SGL_RS06895 at 1074.562 kb on + strand, within SGL_RS06895 at 1074.751 kb on + strand, within SGL_RS06895 at 1074.813 kb on - strand, within SGL_RS06895 at 1074.928 kb on + strand, within SGL_RS06895 at 1074.995 kb on + strand, within SGL_RS06895 at 1074.995 kb on - strand, within SGL_RS06895 at 1075.003 kb on - strand, within SGL_RS06895 at 1075.088 kb on - strand, within SGL_RS06895 at 1075.098 kb on - strand, within SGL_RS06895 at 1075.213 kb on + strand, within SGL_RS06895 at 1075.322 kb on - strand, within SGL_RS06895 at 1075.413 kb on - strand at 1075.451 kb on + strand at 1075.451 kb on + strand at 1075.451 kb on + strand at 1075.451 kb on + strand at 1075.451 kb on + strand at 1075.451 kb on + strand at 1075.451 kb on + strand at 1075.456 kb on + strand at 1075.459 kb on - strand at 1075.459 kb on - strand at 1075.459 kb on - strand at 1075.459 kb on - strand at 1075.459 kb on - strand at 1075.459 kb on - strand at 1075.459 kb on - strand at 1075.464 kb on - strand at 1075.537 kb on - strand at 1075.547 kb on - strand at 1075.601 kb on - strand at 1075.645 kb on + strand at 1075.853 kb on - strand, within SGL_RS20125 at 1076.265 kb on - strand, within SGL_RS06900 at 1076.565 kb on - strand, within SGL_RS06905
Per-strain Table
Position Strand Gene LocusTag Fraction high light; bubbling remove 1,072,212 - SGL_RS06890 0.40 +0.5 1,072,254 - SGL_RS06890 0.44 +0.2 1,072,259 + SGL_RS06890 0.44 +0.2 1,072,259 + SGL_RS06890 0.44 +0.2 1,072,267 - SGL_RS06890 0.45 +0.2 1,072,377 - SGL_RS06890 0.54 -0.0 1,072,393 + SGL_RS06890 0.56 +0.1 1,072,435 - SGL_RS06890 0.59 -0.1 1,072,454 + SGL_RS06890 0.61 +0.0 1,072,462 - SGL_RS06890 0.61 +0.1 1,072,481 + SGL_RS06890 0.63 -0.7 1,072,584 + SGL_RS06890 0.72 -0.5 1,072,640 - SGL_RS06890 0.76 +0.5 1,072,778 + SGL_RS06890 0.88 +1.0 1,073,341 - SGL_RS06895 0.10 -0.4 1,074,064 + SGL_RS06895 0.39 -0.0 1,074,171 + SGL_RS06895 0.43 +1.1 1,074,179 + SGL_RS06895 0.43 -0.0 1,074,231 + SGL_RS06895 0.45 -0.4 1,074,263 + SGL_RS06895 0.46 +0.5 1,074,281 - SGL_RS06895 0.47 +0.6 1,074,536 + SGL_RS06895 0.57 -0.7 1,074,562 + SGL_RS06895 0.58 -0.0 1,074,751 + SGL_RS06895 0.66 +0.2 1,074,813 - SGL_RS06895 0.68 +0.2 1,074,928 + SGL_RS06895 0.72 +0.1 1,074,995 + SGL_RS06895 0.75 -0.5 1,074,995 - SGL_RS06895 0.75 -0.5 1,075,003 - SGL_RS06895 0.75 -0.2 1,075,088 - SGL_RS06895 0.79 -0.9 1,075,098 - SGL_RS06895 0.79 -0.5 1,075,213 + SGL_RS06895 0.84 +0.6 1,075,322 - SGL_RS06895 0.88 +0.1 1,075,413 - +0.3 1,075,451 + -0.3 1,075,451 + -0.9 1,075,451 + +0.2 1,075,451 + +0.2 1,075,451 + +0.2 1,075,451 + +0.3 1,075,451 + +0.0 1,075,456 + -0.2 1,075,459 - -1.1 1,075,459 - +0.2 1,075,459 - -0.4 1,075,459 - +0.3 1,075,459 - -0.2 1,075,459 - +0.7 1,075,459 - -0.4 1,075,464 - +0.4 1,075,537 - -0.4 1,075,547 - +0.3 1,075,601 - -0.2 1,075,645 + -0.2 1,075,853 - SGL_RS20125 0.27 -0.6 1,076,265 - SGL_RS06900 0.59 +0.3 1,076,565 - SGL_RS06905 0.17 -0.9
Or see this region's nucleotide sequence