Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS06895

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS06890 and SGL_RS06895 are separated by 161 nucleotidesSGL_RS06895 and SGL_RS20125 are separated by 186 nucleotidesSGL_RS20125 and SGL_RS06900 are separated by 45 nucleotidesSGL_RS06900 and SGL_RS06905 are separated by 19 nucleotides SGL_RS06890: SGL_RS06890 - cupin domain-containing protein, at 1,071,734 to 1,072,918 _RS06890 SGL_RS06895: SGL_RS06895 - glycogen/starch/alpha-glucan phosphorylase, at 1,073,080 to 1,075,629 _RS06895 SGL_RS20125: SGL_RS20125 - hypothetical protein, at 1,075,816 to 1,075,950 _RS20125 SGL_RS06900: SGL_RS06900 - hypothetical protein, at 1,075,996 to 1,076,454 _RS06900 SGL_RS06905: SGL_RS06905 - Uma2 family endonuclease, at 1,076,474 to 1,077,010 _RS06905 Position (kb) 1073 1074 1075 1076Strain fitness (log2 ratio) -1 0 1at 1072.212 kb on - strand, within SGL_RS06890at 1072.254 kb on - strand, within SGL_RS06890at 1072.259 kb on + strand, within SGL_RS06890at 1072.259 kb on + strand, within SGL_RS06890at 1072.267 kb on - strand, within SGL_RS06890at 1072.377 kb on - strand, within SGL_RS06890at 1072.393 kb on + strand, within SGL_RS06890at 1072.435 kb on - strand, within SGL_RS06890at 1072.454 kb on + strand, within SGL_RS06890at 1072.462 kb on - strand, within SGL_RS06890at 1072.481 kb on + strand, within SGL_RS06890at 1072.584 kb on + strand, within SGL_RS06890at 1072.640 kb on - strand, within SGL_RS06890at 1072.778 kb on + strand, within SGL_RS06890at 1073.341 kb on - strand, within SGL_RS06895at 1074.064 kb on + strand, within SGL_RS06895at 1074.171 kb on + strand, within SGL_RS06895at 1074.179 kb on + strand, within SGL_RS06895at 1074.231 kb on + strand, within SGL_RS06895at 1074.263 kb on + strand, within SGL_RS06895at 1074.281 kb on - strand, within SGL_RS06895at 1074.536 kb on + strand, within SGL_RS06895at 1074.562 kb on + strand, within SGL_RS06895at 1074.751 kb on + strand, within SGL_RS06895at 1074.813 kb on - strand, within SGL_RS06895at 1074.928 kb on + strand, within SGL_RS06895at 1074.995 kb on + strand, within SGL_RS06895at 1074.995 kb on - strand, within SGL_RS06895at 1075.003 kb on - strand, within SGL_RS06895at 1075.088 kb on - strand, within SGL_RS06895at 1075.098 kb on - strand, within SGL_RS06895at 1075.213 kb on + strand, within SGL_RS06895at 1075.322 kb on - strand, within SGL_RS06895at 1075.413 kb on - strandat 1075.451 kb on + strandat 1075.451 kb on + strandat 1075.451 kb on + strandat 1075.451 kb on + strandat 1075.451 kb on + strandat 1075.451 kb on + strandat 1075.451 kb on + strandat 1075.456 kb on + strandat 1075.459 kb on - strandat 1075.459 kb on - strandat 1075.459 kb on - strandat 1075.459 kb on - strandat 1075.459 kb on - strandat 1075.459 kb on - strandat 1075.459 kb on - strandat 1075.464 kb on - strandat 1075.537 kb on - strandat 1075.547 kb on - strandat 1075.601 kb on - strandat 1075.645 kb on + strandat 1075.853 kb on - strand, within SGL_RS20125at 1076.265 kb on - strand, within SGL_RS06900at 1076.565 kb on - strand, within SGL_RS06905

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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1,072,212 - SGL_RS06890 0.40 +0.5
1,072,254 - SGL_RS06890 0.44 +0.2
1,072,259 + SGL_RS06890 0.44 +0.2
1,072,259 + SGL_RS06890 0.44 +0.2
1,072,267 - SGL_RS06890 0.45 +0.2
1,072,377 - SGL_RS06890 0.54 -0.0
1,072,393 + SGL_RS06890 0.56 +0.1
1,072,435 - SGL_RS06890 0.59 -0.1
1,072,454 + SGL_RS06890 0.61 +0.0
1,072,462 - SGL_RS06890 0.61 +0.1
1,072,481 + SGL_RS06890 0.63 -0.7
1,072,584 + SGL_RS06890 0.72 -0.5
1,072,640 - SGL_RS06890 0.76 +0.5
1,072,778 + SGL_RS06890 0.88 +1.0
1,073,341 - SGL_RS06895 0.10 -0.4
1,074,064 + SGL_RS06895 0.39 -0.0
1,074,171 + SGL_RS06895 0.43 +1.1
1,074,179 + SGL_RS06895 0.43 -0.0
1,074,231 + SGL_RS06895 0.45 -0.4
1,074,263 + SGL_RS06895 0.46 +0.5
1,074,281 - SGL_RS06895 0.47 +0.6
1,074,536 + SGL_RS06895 0.57 -0.7
1,074,562 + SGL_RS06895 0.58 -0.0
1,074,751 + SGL_RS06895 0.66 +0.2
1,074,813 - SGL_RS06895 0.68 +0.2
1,074,928 + SGL_RS06895 0.72 +0.1
1,074,995 + SGL_RS06895 0.75 -0.5
1,074,995 - SGL_RS06895 0.75 -0.5
1,075,003 - SGL_RS06895 0.75 -0.2
1,075,088 - SGL_RS06895 0.79 -0.9
1,075,098 - SGL_RS06895 0.79 -0.5
1,075,213 + SGL_RS06895 0.84 +0.6
1,075,322 - SGL_RS06895 0.88 +0.1
1,075,413 - +0.3
1,075,451 + -0.3
1,075,451 + -0.9
1,075,451 + +0.2
1,075,451 + +0.2
1,075,451 + +0.2
1,075,451 + +0.3
1,075,451 + +0.0
1,075,456 + -0.2
1,075,459 - -1.1
1,075,459 - +0.2
1,075,459 - -0.4
1,075,459 - +0.3
1,075,459 - -0.2
1,075,459 - +0.7
1,075,459 - -0.4
1,075,464 - +0.4
1,075,537 - -0.4
1,075,547 - +0.3
1,075,601 - -0.2
1,075,645 + -0.2
1,075,853 - SGL_RS20125 0.27 -0.6
1,076,265 - SGL_RS06900 0.59 +0.3
1,076,565 - SGL_RS06905 0.17 -0.9

Or see this region's nucleotide sequence