Experiment: high light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS05170 and SGL_RS05175 are separated by 238 nucleotides SGL_RS05175 and SGL_RS05180 are separated by 3 nucleotides SGL_RS05180 and SGL_RS05185 are separated by 12 nucleotides
SGL_RS05170: SGL_RS05170 - hypothetical protein, at 709,090 to 709,797
_RS05170
SGL_RS05175: SGL_RS05175 - 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit CofG, at 710,036 to 710,977
_RS05175
SGL_RS05180: SGL_RS05180 - alpha/beta hydrolase, at 710,981 to 711,595
_RS05180
SGL_RS05185: SGL_RS05185 - SpoIID/LytB domain-containing protein, at 711,608 to 712,768
_RS05185
Position (kb) 710
711 Strain fitness (log2 ratio) -1
0
1
2 at 709.207 kb on - strand, within SGL_RS05170 at 709.624 kb on + strand, within SGL_RS05170 at 709.665 kb on + strand, within SGL_RS05170 at 710.318 kb on + strand, within SGL_RS05175 at 710.388 kb on + strand, within SGL_RS05175 at 710.388 kb on + strand, within SGL_RS05175 at 710.452 kb on + strand, within SGL_RS05175 at 711.009 kb on + strand at 711.026 kb on + strand at 711.064 kb on + strand, within SGL_RS05180 at 711.210 kb on + strand, within SGL_RS05180 at 711.234 kb on - strand, within SGL_RS05180 at 711.285 kb on - strand, within SGL_RS05180 at 711.295 kb on - strand, within SGL_RS05180 at 711.383 kb on + strand, within SGL_RS05180 at 711.427 kb on - strand, within SGL_RS05180 at 711.592 kb on - strand at 711.598 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction high light; bubbling remove 709,207 - SGL_RS05170 0.17 +0.4 709,624 + SGL_RS05170 0.75 -0.7 709,665 + SGL_RS05170 0.81 -1.1 710,318 + SGL_RS05175 0.30 +2.1 710,388 + SGL_RS05175 0.37 +1.6 710,388 + SGL_RS05175 0.37 +2.0 710,452 + SGL_RS05175 0.44 +1.9 711,009 + +1.9 711,026 + +1.2 711,064 + SGL_RS05180 0.13 +1.7 711,210 + SGL_RS05180 0.37 +2.3 711,234 - SGL_RS05180 0.41 +0.8 711,285 - SGL_RS05180 0.49 +1.1 711,295 - SGL_RS05180 0.51 -0.1 711,383 + SGL_RS05180 0.65 +1.8 711,427 - SGL_RS05180 0.73 +1.6 711,592 - +1.1 711,598 - +0.5
Or see this region's nucleotide sequence