Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS04990

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS04985 and SGL_RS04990 are separated by 56 nucleotidesSGL_RS04990 and SGL_RS04995 are separated by 204 nucleotidesSGL_RS04995 and SGL_RS05000 are separated by 46 nucleotides SGL_RS04985: SGL_RS04985 - reverse transcriptase-like protein, at 669,759 to 670,949 _RS04985 SGL_RS04990: SGL_RS04990 - class I SAM-dependent methyltransferase, at 671,006 to 671,707 _RS04990 SGL_RS04995: SGL_RS04995 - hypothetical protein, at 671,912 to 672,244 _RS04995 SGL_RS05000: SGL_RS05000 - signal peptidase I, at 672,291 to 672,947 _RS05000 Position (kb) 671 672Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 670.030 kb on - strand, within SGL_RS04985at 670.032 kb on - strand, within SGL_RS04985at 670.106 kb on + strand, within SGL_RS04985at 670.195 kb on + strand, within SGL_RS04985at 670.260 kb on + strand, within SGL_RS04985at 670.301 kb on - strand, within SGL_RS04985at 670.318 kb on + strand, within SGL_RS04985at 670.326 kb on - strand, within SGL_RS04985at 670.349 kb on - strand, within SGL_RS04985at 670.349 kb on - strand, within SGL_RS04985at 670.415 kb on + strand, within SGL_RS04985at 670.435 kb on + strand, within SGL_RS04985at 670.480 kb on - strand, within SGL_RS04985at 670.497 kb on + strand, within SGL_RS04985at 670.499 kb on - strand, within SGL_RS04985at 670.505 kb on - strand, within SGL_RS04985at 670.548 kb on + strand, within SGL_RS04985at 670.680 kb on - strand, within SGL_RS04985at 670.717 kb on + strand, within SGL_RS04985at 670.808 kb on + strand, within SGL_RS04985at 670.814 kb on - strand, within SGL_RS04985at 670.861 kb on - strandat 670.957 kb on + strandat 671.011 kb on + strandat 671.055 kb on - strandat 671.069 kb on + strandat 671.112 kb on - strand, within SGL_RS04990at 671.141 kb on + strand, within SGL_RS04990at 671.199 kb on - strand, within SGL_RS04990at 671.232 kb on + strand, within SGL_RS04990at 671.503 kb on - strand, within SGL_RS04990at 671.586 kb on - strand, within SGL_RS04990at 671.630 kb on - strand, within SGL_RS04990at 671.841 kb on + strandat 671.855 kb on + strandat 671.855 kb on + strandat 671.863 kb on - strandat 671.863 kb on - strandat 671.896 kb on + strandat 671.896 kb on + strandat 671.978 kb on + strand, within SGL_RS04995at 672.195 kb on - strand, within SGL_RS04995

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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670,030 - SGL_RS04985 0.23 -0.9
670,032 - SGL_RS04985 0.23 -0.1
670,106 + SGL_RS04985 0.29 -0.1
670,195 + SGL_RS04985 0.37 +0.4
670,260 + SGL_RS04985 0.42 -1.0
670,301 - SGL_RS04985 0.46 -0.1
670,318 + SGL_RS04985 0.47 -1.5
670,326 - SGL_RS04985 0.48 -1.3
670,349 - SGL_RS04985 0.50 -0.9
670,349 - SGL_RS04985 0.50 +0.3
670,415 + SGL_RS04985 0.55 -0.5
670,435 + SGL_RS04985 0.57 +0.6
670,480 - SGL_RS04985 0.61 -0.3
670,497 + SGL_RS04985 0.62 -1.4
670,499 - SGL_RS04985 0.62 -0.8
670,505 - SGL_RS04985 0.63 -0.4
670,548 + SGL_RS04985 0.66 -0.4
670,680 - SGL_RS04985 0.77 +0.1
670,717 + SGL_RS04985 0.80 +0.1
670,808 + SGL_RS04985 0.88 -0.5
670,814 - SGL_RS04985 0.89 -0.3
670,861 - +0.1
670,957 + +0.1
671,011 + +0.7
671,055 - -0.4
671,069 + +0.7
671,112 - SGL_RS04990 0.15 +0.8
671,141 + SGL_RS04990 0.19 +0.8
671,199 - SGL_RS04990 0.27 +1.2
671,232 + SGL_RS04990 0.32 +1.2
671,503 - SGL_RS04990 0.71 +0.9
671,586 - SGL_RS04990 0.83 +1.1
671,630 - SGL_RS04990 0.89 +0.9
671,841 + -3.4
671,855 + -5.0
671,855 + -2.7
671,863 - -4.0
671,863 - -4.3
671,896 + -5.7
671,896 + -3.5
671,978 + SGL_RS04995 0.20 -2.6
672,195 - SGL_RS04995 0.85 -5.2

Or see this region's nucleotide sequence